Phyre 2 alignment of P64426 with d1ur4a

Job Description P64426
Confidence 97.75% Date Thu Jan 5 12:08:13 GMT 2012

Rank 193 Aligned Residues 256

% Identity 17% Template d1ur4a_

SCOP info TIM beta/alpha-barrel (Trans)glycosidases beta-glycanases

Resolution 2.2

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	K	L	D	H	L	Q	R	L	G	I	N	T	V	F	F	Q	V	K	P	D	G	T	A	L	W	P	S	K	I	L	P	W	S	D	L	M	T	G	K	I	G	E	N	P	G	Y	D	P	L	Q	F	M	L	D	E	A	H	K	R	G	M	K	V	H	A	W	F	N	P	Y	R	V	S	V	N	T	K	P	G
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	D	I	F	K	T	L	K	E	A	G	V	N	Y	V	R	V	R	I	W	N	D	.	.	.	.	.	.	.	.	.	.	P	Y	D	A	N	G	N	G	Y	G	G	G	N	N	D	L	E	K	A	I	Q	I	G	K	R	A	T	A	N	G	M	K	L	L	A	D	F	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T										S		.	.	.	.	.	.	.	.	.	.		B		T	T			B		S	T	T																	T	T								.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.											.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.

	173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	I	R	E	L	N	S	T	L	S	Q	Q	P	A	S	V	Y	V	Q	H	R	D	W	I	R	T	S	G	D	R	F	V	L	D	P	G	I	P	E	V	Q	D	W	I	T	S	I	V	A	E	V	V	S	R	Y	P	V	D	G	V	Q	F	D	D	Y	F	Y	T	E	S	P	G	S	R	L	N	D	N	E	T
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Y	S	D	F	W	A	D	P	A	K	Q	K	A	P	K	A	W	A	N	L	N	F	E	D	K	K	T	A	L	Y	Q	Y	T	K	Q	S	L	K	A	M	K	A	A	G	I	D	I	G	M	V	Q	V	G	N	E	T	N	G	G	L	A	G	E	T	D
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S	S			S	S	S						G	G	G	T	T																								T	T									S	S	S		S	S		B	T	T	B
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

	253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	R	K	Y	G	G	A	F	A	S	K	A	D	W	R	R	N	N	T	Q	Q	L	I	A	K	V	S	H	T	I	K	S	I	K	P	G	V	E	F	G	V	S	P	A	G	V	W	R	N	R	S	H	D	P	L	G	S	D	T	R	G	A	A	A	Y	D	E	S	Y	A	D	T	R	R	W	V	E	Q	G	L
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	W	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	M	S	Q	L	F	N	A	G	S	Q	A	V	R	E	T	D	S	N	I	L	V	A	L	H	F	T	N	P	E	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	Y	A	W	I	A	E	T	L	H	R	H	H
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T	T	S									T	T	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T												T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	176	.																.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.																		210	.	.	.	.	.	.	.	.	.	220	.	.	.

	333	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.														.	.	.	.	.
Predicted Secondary structure				.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	L	D	Y	.	I	A	P	Q	I	Y	W	P	F	S	R	S	A	A	R	Y	D	V	L	A	K	W	W	A	D	V	V	K	P	T	R	T	R	L	Y	I	G	I	A	F	Y	K	V	G	E	P	S	K	I	E	P	D	W	M	I	N	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	E	L	K
Query Conservation				.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.														.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.
Template Sequence	V	D	Y	D	V	F	A	S	S	Y	Y	P	F	W	H	G	T	.	.	L	K	N	L	T	S	V	L	T	S	V	A	D	T	Y	G	K	K	V	M	V	A	E	T	S	Y	T	Y	T	A	E	D	G	D	G	H	G	N	T	A	P	K	N	G	Q	T	L	N	N	P	V	T	V	Q	G	Q	A	N	A	V	R
Template Known Secondary structure				S								T	T	T	S			.	.																												S		S			S	S	S	S			S	S	S		T	T	S				S		S	S
Template Predicted Secondary structure																		.	.
Template SS confidence
	224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

	399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	Q	L	D	L	N	D	A	V	P	E	I	S	G	T	I	L	F	R	E	D
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence	D	V	I	Q	A	V	S	D	V	G	E	.	A	G	I	G	V	F	Y	W	E
Template Known Secondary structure								T	T		T	.	T
Template Predicted Secondary structure												.
Template SS confidence
	302	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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