Job Description P64426 Confidence 98.50% Date Thu Jan 5 12:08:13 GMT 2012 Rank 133 Aligned Residues 221 % Identity 16% Template c3d5hA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:haementhin; PDBTitle: crystal structure of haementhin from haemanthus multiflorus2 at 2.0a resolution: formation of a novel loop on a tim3 barrel fold and its functional significance Resolution 2.00 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		K	L	D	H	L	Q	R	L	G	I	N	T	V	.	.	.	F	F	Q	V	K	P	D	G	T	A	L	W	P	S	K	I	L	P	W	S	D	L	M	T	G	K	I	G	E	N	P	G	Y	D	P	L	Q	F	M	L	D	E	A	H	K	R	G	M	K	V	H	A	W	F	N	P	Y	R	V	S	V	N	T	K
Query Conservation															.	.	.
Alig confidence															.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	A	T	C	D	T	G	N	Y	A	Y	V	I	I	G	F	L	N	T	F	G	G	G	Q	T	P	A	L	D	I	S	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	S	G	L	E	P	Q	I	K	H	C	Q	S	K	N	V	K	V	L	L	S	I	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	S			S												T	T							S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.		T	G	G	G										T	T								.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.														.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.													.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	G	T	I	R	E	L	N	S	T	L	S	Q	Q	P	A	S	V	Y	V	Q	H	R	D	W	I	R	T	S	G	D	R	F	V	L	D	P	G	I	P	E	V	Q	D	W	I	T	S	I	V	A	E	V	V	S	R	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	V	D	G	V	Q	F	D	D	Y	F
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	P	K	G	P	Y	S	L	D	S	R	S	D	A	N	D	L	A	V	Y	L	F	N	N	F	L	L	P	P	G	H	S	E	N	R	P	F	G	N	A	V	L	D	G	I	D	F	H	I	.	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S		S	B				S																T	S				S	S	S			T	T	T	T				S							.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.
Template SS confidence
																														75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T	E	S	P	G	S	R	L	N	D	N	E	T	Y	R	K	Y	G	G	A	F	A	S	K	A	D	W	R	R	N	N	T	Q	Q	L	I	A	K	V	S	H	T	I	K	S	I	K	P	G	V	E	F	G	V	S	P	A	G	V	W	R	N	R	S	H	D	P	L	G	S	D	T	R	G	A	A	A	Y	D
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	G	G	P	S	Q	Y	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	A	N	I	L	S	S	F	R	L	A	.	G	T	E	F	A	L	T	A	A	P	Q	C	V	Y	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S		S	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T	.	T										B	S	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.																											.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																									.	.																										.
Query SS confidence																									.	.																										.
Query Sequence		E	S	Y	A	D	T	R	R	W	V	E	Q	G	L	L	D	Y	I	A	P	Q	I	Y	.	.	W	P	F	S	R	S	A	A	R	Y	D	V	L	A	K	W	W	A	D	V	V	K	P	T	R	.	T	R	L	Y	I	G	I	A	F	Y	K	V	G	E	P	S	K	I	E	P	D	W	M	I	N	G	G	V	P
Query Conservation																									.	.																										.
Alig confidence		.	.	.																					.	.																										.																		.	.	.	.	.	.	.
Template Conservation		.	.	.																																																																		.	.	.	.	.	.	.
Template Sequence		.	.	.	P	N	L	G	T	V	I	N	S	A	T	F	D	A	I	W	V	Q	F	Y	N	N	P	Q	C	S	Y	S	S	G	N	A	E	A	L	M	N	A	W	R	E	W	S	M	K	A	R	T	K	K	V	F	L	G	F	P	A	H	P	D	A	A	G	S	G	.	.	.	.	.	.	.	Y	M	P	P	E
Template Known Secondary structure		.	.	.	T	T	T					T	T	T			S								S		T	T	T	S		B	T	T	B	T																S	S								S	S	T	T	S	S	S	S		.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.																																																																		.	.	.	.	.	.	.
Template SS confidence
					162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.								.	.	.	230	.
		396	.	.	.	400	.	.	.	.		.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		E	L	K	K	Q	L	D	L	N	.	D	A	V	P	E	I	S	G	T	I	L	F	R	E	D	Y
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		K	V	K	F	H	V	F	P	A	A	K	K	S	Y	K	F	G	G	I	M	L	W	D	S	Y	W
Template Known Secondary structure							T					T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions