Job Description P64426 Confidence 99.51% Date Thu Jan 5 12:08:13 GMT 2012 Rank 3 Aligned Residues 207 % Identity 14% Template c3amkA_ PDB info PDB header:transferase Chain: A: PDB Molecule:os06g0726400 protein; PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	I	S	N	P	T	S	R	A	R	V	Q	Q	Q	A	M	I	D	K	L	D	H	L	Q	R	L	G	I	N	T	V	F	F	Q	V	K	P	D	G	T	A	L	W	P	S	K	I	L	P	W	S	D	L	M	T	G	K	I	G	E	N	P	G	Y	D	P	L	Q	F	M	L	D	E	A	H	K	R	G	M
Query Conservation
Alig confidence																																																																	.	.
Template Conservation																																																																	.	.
Template Sequence		V	G	M	S	G	E	E	P	E	V	S	T	Y	R	E	F	A	D	N	V	L	P	R	I	R	A	N	N	Y	N	T	V	Q	L	M	A	I	M	E	H	S	Y	Y	A	S	F	G	Y	H	V	T	N	F	F	A	V	S	S	R	S	G	T	P	.	.	E	D	L	K	Y	L	V	D	K	A	H	S	L	G	L
Template Known Secondary structure		S	T	T		S	S	S	S	S											T							T	T								S					S		G	G	G	T	T		S		S							G	G	G				.	.													T	T
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	H	A	W	F	N	P	Y	R	V	S	V	N	T	K	P	G	T	I	R	E	L	N	S	T	L	S	Q	Q	P	A	S	V	Y	V	Q	H	R	D	W	I	R	T	S	G	D	R	F	V	L	D	P	G	I	P	E	V	Q	D	W	I	T	S	I	V	A	E	V	V	S	R	Y	P	V	D	G	V	Q	F
Query Conservation
Alig confidence																																.	.
Template Conservation																																.	.
Template Sequence		R	V	L	M	D	V	V	H	S	H	A	S	N	N	V	T	D	G	L	N	G	Y	D	V	G	Q	N	T	H	E	.	.	S	Y	F	H	T	G	D	R	G	Y	H	K	L	W	D	S	R	L	F	N	Y	A	N	W	E	V	L	R	F	L	L	S	N	L	R	Y	W	M	D	E	F	M	F	D	G	F	R	F
Template Known Secondary structure										S						T	T	T	S	G	G	G	G		S	S			G	G	G	.	.	S	S	B			G	G	G	G			T	T	T	T				B		T	T	S																					S
Template Predicted Secondary structure																																.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		235			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		D	.	.	D	Y	F	Y	T	E	S	P	G	S	R	L	N	D	N	E	T	Y	R	K	Y	G	G	A	F	A	S	K	A	D	W	R	R	N	N	T	Q	Q	L	I	A	K	V	S	H	T	I	K	S	I	K	P	G	V	E	F
Query Conservation			.	.
Alig confidence			.	.																																.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.
Template Sequence		D	G	V	T	S	M	L	Y	H	H	H	G	I	N	K	G	F	T	G	N	Y	K	E	Y	F	S	L	D	T	D	V	D	A	I	.	.	.	.	.	.	V	Y	M	M	L	A	N	H	L	M	H	K	L	L	P	E	A	T	I
Template Known Secondary structure		T	T						B	T	T	T	T	T	T					S						S	S	T	T	B						.	.	.	.	.	.															T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.							.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions