Job Description P64426 Confidence 61.31% Date Thu Jan 5 12:08:13 GMT 2012 Rank 338 Aligned Residues 155 % Identity 14% Template c2xfyA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:beta-amylase; PDBTitle: crystal structure of barley beta-amylase complexed with2 alpha-cyclodextrin Resolution 1.21 Å

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		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	A	M	I	D	K	L	D	H	L	Q	R	L	G	I	N	T	V	F	F	Q	V	K	P	D	G	T	A	L	W	P	S	K	I	L	P	W	S	D	L	M	T	G	K	I	G	E	N	P	G	Y	D	P	L	Q	F	M	L	D	E	A	H	K	R	G	M	K	V	H	A	W	F	N	P	Y	R	V	S	V
Query Conservation
Alig confidence																												.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template Sequence		G	D	E	L	R	A	Q	L	R	K	L	V	E	A	G	V	D	G	V	M	V	D	V	W	W	G	.	.	.	.	.	.	.	L	V	E	G	K	G	P	K	A	Y	.	.	.	.	.	.	.	D	W	S	A	Y	K	Q	L	F	E	L	V	Q	K	A	G	L	K	L	Q	A	I	M	S	F	H	Q	C	G	G
Template Known Secondary structure															T	T												.	.	.	.	.	.	.			T		S	S	T	T			.	.	.	.	.	.	.															T	T										S		B
Template Predicted Secondary structure																												.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.								.	.	.	.	60	.	.	.	.	.								.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		168	.	170	.	.	.	.	.		.	.	.	.	180	.				.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.									.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.				.	.	230	.	.
Predicted Secondary structure										.							.	.	.																												.	.	.	.	.	.	.	.																				.	.	.
Query SS confidence										.							.	.	.																												.	.	.	.	.	.	.	.																				.	.	.
Query Sequence		N	T	K	P	G	T	I	R	.	E	L	N	S	T	L	.	.	.	S	Q	Q	P	A	S	V	Y	V	Q	H	R	D	W	I	R	T	S	G	D	R	F	V	L	D	P	G	.	.	.	.	.	.	.	.	I	P	E	V	Q	D	W	I	T	S	I	V	A	E	V	V	S	R	Y	.	.	.	P	V	D	G	V
Query Conservation										.							.	.	.																												.	.	.	.	.	.	.	.																				.	.	.
Alig confidence										.							.	.	.																												.	.	.	.	.	.	.	.																				.	.	.
Template Conservation
Template Sequence		N	V	G	D	A	V	N	I	P	I	P	Q	W	V	R	D	V	G	T	R	D	P	D	I	F	Y	T	D	G	H	G	T	R	N	I	E	Y	L	T	L	G	V	D	N	Q	P	L	F	H	G	R	S	A	V	Q	M	Y	A	D	Y	M	T	S	F	R	E	N	M	K	E	F	L	D	A	G	V	I	V	D	I
Template Known Secondary structure		S	T	T		S			B		S												G	G	G					T	T										G	G	G	T	T				B	T	T	B																							T	T
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		233	.	.									.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.
Query Sequence		Q	F	D	.	.	.	.	.	.	.	.	D	Y	F	Y	T	E	S	P	G	S	R	L	N	D	N	E	T	Y	R	K	Y
Query Conservation					.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	V	G	L	G	P	A	G	E	M	R	Y	P	S	Y	P	Q	S	H	G	W	S	F	P	G	I	G	E	F	I	C	Y
Template Known Secondary structure						S	G	G	G		S	S						T	T	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions