Job Description P64426 Confidence 97.99% Date Thu Jan 5 12:08:13 GMT 2012 Rank 178 Aligned Residues 292 % Identity 13% Template c2epoB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:n-acetyl-beta-d-glucosaminidase; PDBTitle: n-acetyl-b-d-glucosaminidase (gcna) from streptococcus gordonii Resolution 1.56 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	L	V	A	L	A	L	L	L	C	S	C	K	S	T	P	P	E	S	M	V	T	P	P	A	G	S	K	P	P	A	T	T	Q	Q	S	S	Q	P	M	R	G	I	W	L	A	T	V	S	R	L	D	W	P	P	V	S	S	V	N	I	S	N	P	T	S	R	A	R	V	Q	Q	Q	A	M	I	D	K	L
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	Y	R	A	L	A	L	L	S	A	A	L	R	S	G	Q	D	E	V	Q	I	E	E	.	.	.	.	.	.	.	.	.	.	.	E	A	A	Y	E	D	L	A	Y	M	A	D	C	S	R	N	A	V	L	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	A	K	K	M	I
Template Known Secondary structure																T	T		S	S						.	.	.	.	.	.	.	.	.	.	.			S		S									S	S	S			B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80												.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.																		.	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	L	Q	R	L	G	I	N	T	V	F	F	Q	V	K	P	D	G	T	A	L	W	P	S	K	I	L	P	W	S	D	L	M	T	G	K	I	G	E	N	P	G	Y	D	P	L	Q	F	M	L	D	E	A	H	K	R	G	M	K	V	H	A	W	F	N	P	Y	R	V	S	V	N	T	K	P	G	T	I	R
Query Conservation
Alig confidence																				.	.	.	.																			.	.	.	.																							.	.	.	.
Template Conservation																				.	.	.	.																			.	.	.	.																							.	.	.	.
Template Sequence		E	V	L	A	L	M	G	Y	S	T	F	E	L	Y	M	E	D	T	.	.	.	.	Y	E	I	E	N	Q	P	Y	F	G	Y	F	R	G	R	Y	T	V	.	.	.	.	A	E	L	Q	E	I	E	D	Y	A	A	D	F	D	M	S	F	V	P	C	I	Q	.	.	.	.	T	L	A	H	L	S	A	F	V	K
Template Known Secondary structure								T									S	S		.	.	.	.	B			T	T		T	T	T	T	T	T	T	T		B			.	.	.	.												T	T	T									.	.	.	.	S	S	S							T
Template Predicted Secondary structure																				.	.	.	.																			.	.	.	.																							.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.					.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	N	S	T	L	S	Q	Q	P	A	S	V	Y	V	Q	H	R	D	W	I	R	T	S	G	D	R	F	V	L	D	P	G	I	P	E	V	Q	D	W	I	T	S	I	V	A	E	V	V	S	R	Y	P	V	D	G	V	Q	F	D	D	Y	F	Y	T	E	S	P	G	S	R	L	N	D	N	E	T	Y	R	K
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		W	G	I	K	E	V	Q	E	L	R	D	V	E	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	I	G	E	E	K	V	Y	D	L	I	E	G	M	F	Q	T	M	A	H	.	L	H	T	R	K	I	N	I	G	M	D	E	A	H	L	V	G	L	G	R	Y	L	I	K	H	G	F	Q	N
Template Known Secondary structure									T	T				T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T																T	T	.	S	S												T	T	T	T	S	S								S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.															.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		Y	G	G	A	F	A	S	K	A	D	W	R	R	N	N	T	Q	Q	L	I	A	K	V	S	H	T	I	K	S	I	K	P	G	V	E	F	G	V	S	P	A	G	V	W	R	N	R	S	H	D	P	L	G	S	D	T	R	.	G	A	A	A	Y	D	E	S	Y	A	D	T	R	R	W	V	E	Q	G	L	L	D
Query Conservation																																																											.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	R	S	L	L	M	C	Q	H	L	E	R	V	L	D	I	A	D	K	Y	G	F	N	C	Q	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	S	D	M	F	V	Y	L	D	R	L	K	E	R	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.																				T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T								G	G	G	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.																				.	.	.	270	.	.	.	.	.	.	.	.	.	280
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		Y	I	A	P	Q	I	Y	W	P	F	S	R	S	A	A	.	R	Y	D	V	L	A	K	W	W	A	D	V	V	K	P	T	R	T	R	L	Y	I	G	I	A	F	Y	K	V	G	E	P	S	K	I	E	P	D	W	M	I	N	G	G	V	P	E	L	K	K	Q	L	D	L	N	D	A	V	P	E	I	S	G	T
Query Conservation																	.
Alig confidence		.	.														.												.	.																						.	.	.	.	.	.	.																			.
Template Conservation		.	.																										.	.																						.	.	.	.	.	.	.																			.
Template Sequence		.	.	V	T	L	V	Y	W	D	Y	Y	Q	D	S	E	E	K	Y	N	R	N	F	Q	N	H	H	K	.	.	I	S	Q	D	I	A	F	A	G	G	A	W	K	W	I	G	F	T	P	H	N	.	.	.	.	.	.	.	H	F	S	R	L	V	A	I	E	A	N	K	A	C	R	K	N	Q	.	V	K	E	V
Template Known Secondary structure		.	.								S				S														.	.			S												S	S	S	S				.	.	.	.	.	.	.																	T	T	.
Template Predicted Secondary structure		.	.																										.	.																						.	.	.	.	.	.	.																			.
Template SS confidence
				302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.								.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.
		414	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		370	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions