Job Description P64426 Confidence 96.64% Date Thu Jan 5 12:08:13 GMT 2012 Rank 243 Aligned Residues 125 % Identity 15% Template c1ktbA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: the structure of alpha-n-acetylgalactosaminidase Resolution 1.90 Å

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		W	L	A	T	V	S	R	L	D	W	P	P	V	S	S	V	N	I	S	N	P	T	S	R	A	R	V	Q	Q	Q	A	M	I	D	K	L	D	H	.	L	Q	R	L	G	I	N	T	V	F	F	Q	V	K	P	D	G	T	A	L	W	P	S	K	I	L	P	W	S	D	L	M	T	G	K	I	G	E	N	P	G
Query Conservation																																								.
Alig confidence																				.	.	.	.	.																.												.	.	.	.	.	.																								.
Template Conservation																				.	.	.	.	.																												.	.	.	.	.	.																								.
Template Sequence		W	E	R	F	R	C	N	V	N	C	R	E	D	P	R	Q	C	I	.	.	.	.	.	S	E	M	L	F	M	E	M	A	D	R	I	A	E	D	G	W	R	E	L	G	Y	K	Y	I	N	I	.	.	.	.	.	.	D	D	C	W	A	A	K	Q	R	D	A	E	G	R	L	V	P	D	P	E	R	F	P	.
Template Known Secondary structure						T	T				T	T	T		T	T	T	S	S	.	.	.	.	.	S														S	S					T							.	.	.	.	.	.		S	S		B		S	S			T	T	S				B		T	T	T		T	.
Template Predicted Secondary structure																				.	.	.	.	.																												.	.	.	.	.	.																								.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60							.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	P	L	Q	F	M	L	D	E	A	H	K	R	G	M	K	V	H	A	W	F	N	P	Y	R	V	S	V	N	T	K	P	G	T	I	R	E	L	N	S	T	L	S	Q	Q	P	A	S	V	Y	V	Q	H	R	D	W	I	R	T	S	G	D	R	F	V	L	D	P	G	I	P	E	V	Q	D	W	I	T	S
Query Conservation
Alig confidence		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	R	G	I	K	A	L	A	D	Y	V	H	A	R	G	L	K	L	G	I	Y	G	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	L	T	C	G	G	Y	P	G	T	T	L	D	R	V	E	Q
Template Known Secondary structure		.	T											T	T	T									B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	B		T	T	S	S	B		B		G	G	G
Template Predicted Secondary structure		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.																																							.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	A	E	V	V	S	R	Y	P	V	D	G	V	Q	F	D	D
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		D	A	Q	T	F	A	E	.	W	G	V	D	M	L	K	L	D	G
Template Known Secondary structure									.		T
Template Predicted Secondary structure									.
Template SS confidence
		125	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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