Job Description P64426 Confidence 97.88% Date Thu Jan 5 12:08:13 GMT 2012 Rank 186 Aligned Residues 302 % Identity 16% Template c1j0yD_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:beta-amylase; PDBTitle: beta-amylase from bacillus cereus var. mycoides in complex2 with glucose Resolution 2.10 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																															.		.
Query SS confidence																															.		.
Query Sequence		Q	A	M	I	D	K	L	D	H	L	Q	R	L	G	I	N	T	V	F	F	Q	V	K	P	D	G	T	A	L	.	W	.	P	S	K	I	L	P	W	S	D	L	M	T	G	K	I	G	E	N	P	G	Y	D	P	L	Q	F	M	L	D	E	A	H	K	R	G	M	K	V	H	A	W	F	N	P	Y	R	V	S
Query Conservation																															.		.
Alig confidence																									.						.		.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	T	F	E	N	D	L	R	W	A	K	Q	N	G	F	Y	A	I	T	V	D	F	W	.	W	G	D	M	E	K	N	G	D	Q	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	S	Y	A	Q	R	F	A	Q	S	V	K	N	A	G	M	K	M	I	P	I	I	S	T	H	Q	C	G
Template Known Secondary structure														T	T										.					T		S	S	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	T										S		B	S
Template Predicted Secondary structure																									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.																.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		167	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure												.								.	.																											.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.								.	.																											.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	N	T	K	P	G	T	I	R	E	.	L	N	S	T	L	S	Q	.	.	Q	P	A	S	V	Y	V	Q	H	R	D	W	I	R	T	S	G	D	R	F	V	L	D	P	G	I	.	P	E	V	Q	D	W	I	T	S	I	V	A	E	V	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.								.	.																											.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.								.	.																											.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	N	V	G	D	D	C	N	V	P	I	P	S	W	V	W	N	Q	K	S	D	D	S	L	Y	F	K	S	E	T	G	T	V	N	K	E	T	L	N	P	L	A	S	D	V	I	R	K	E	Y	G	E	L	Y	T	A	F	A	A	A	M	K	P	Y	K	D	V	I	A	K	I	Y	L	S	G	G	P	A	G	E
Template Known Secondary structure		S	S	T	T					B				G	G	G	G	G	G		S	S	S		S	S				T	T						S	S			T	T																					G	G	G	G	G	G	B								S	G	G	G	B
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
			226	.					.	.	230	.	.	.	.	.	.	.	.																																			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure		.			.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Query SS confidence		.			.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Query Sequence		.	R	Y	.	.	.	.	P	V	D	G	V	Q	F	D	D	Y	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	T	E	S	P	G	S	R	L	N	D	N	E	T	Y	R	K	Y	G	G	A	F	A	S	K	A	D	.
Query Conservation		.			.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Alig confidence		.			.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation
Template Sequence		L	R	Y	P	S	Y	T	T	S	D	G	T	G	Y	P	S	R	G	K	F	Q	A	Y	T	E	F	A	K	S	K	F	R	L	W	V	L	N	K	Y	G	S	L	N	E	V	N	K	A	W	G	T	K	L	I	S	E	L	A	I	L	P	P	S	D	G	E	Q	F	L	M	N	G	Y	L	S	M	Y	G	K	D
Template Known Secondary structure		S	S						T	T	T	T			T	T	S								S																S	S									T				S	S	G	G	G			S		S								T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
					266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.				.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																							.	.	.																				.	.							.
Query SS confidence		.	.	.																							.	.	.																				.	.							.
Query Sequence		.	.	.	W	R	R	N	N	T	Q	Q	L	I	A	K	V	S	H	T	I	K	S	I	K	P	.	.	.	G	V	E	F	G	V	S	P	A	G	V	W	R	N	R	S	H	D	P	.	.	L	G	S	D	T	R	.	G	A	A	A	Y	D	E	S	Y	A	D	T	R	R	W	V	E	Q	G	L	L	D	Y	I
Query Conservation		.	.	.																							.	.	.																				.	.							.
Alig confidence		.	.	.																							.	.	.																				.	.							.					.	.	.	.
Template Conservation																																																														.	.	.	.
Template Sequence		Y	L	E	W	Y	Q	G	I	L	E	N	H	T	K	L	I	G	E	L	A	H	N	A	F	D	T	T	F	Q	V	P	I	G	A	K	I	A	G	V	H	W	Q	Y	N	N	P	T	I	P	H	G	A	E	K	P	A	G	Y	N	D	.	.	.	.	Y	S	H	L	L	D	A	F	K	S	A	K	L	D	V	T
Template Known Secondary structure																																										T	T	T	T		S	S	S	T	T	T	T					T		S		.	.	.	.												T
Template Predicted Secondary structure																																																														.	.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.					.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.				.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		A	P	Q	I	Y	W	P	F	S	R	S	A	.	.	.	A	R	Y	D	V	L	A	K	W	W	A	D	V	V	K	P	T	R	T	R	L	Y	I	G	I	A	F	Y	K	V	G	E	P	S	K	I	E	P	D	W	M	I	N	G	G	V	P	E	L	K	K	Q	L	D	L	N	D	A	V	P	E	I	S	G	T
Query Conservation														.	.	.
Alig confidence														.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	T	C	L	E	M	T	D	K	G	S	Y	P	E	Y	S	M	P	K	T	L	V	Q	N	I	A	T	L	A	N	E	K	G	I	V	L	N	G	E	N	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	G	N	E	E	E	Y	K	R	V	A	E	M	A	F	N	Y	N	F	A	G	F
Template Known Secondary structure					T	T							T	T	T																			T								S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S														T	T		S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370																.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	F	R	E	D	Y	L	N	K	P	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	L	R	Y	Q	D	V	M	Y	N	N
Template Known Secondary structure				S							T
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions