Job Description P64426 Confidence 97.73% Date Thu Jan 5 12:08:13 GMT 2012 Rank 195 Aligned Residues 174 % Identity 22% Template c1e9lA_ PDB info PDB header:macrophage secretory protein Chain: A: PDB Molecule:ym1 secretory protein; PDBTitle: the crystal structure of novel mammalian lectin ym12 suggests a saccharide binding site Resolution 2.5 Å

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		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		G	I	P	E	V	Q	D	W	I	T	S	I	V	A	E	V	V	S	R	Y	P	V	D	G	V	Q	F	D	D	Y	F	Y	T	E	S	P	G	S	R	L	N	D	N	E	T	Y	R	K	Y	G	G	A	F	A	S	K	A	D	W	R	R	N	N	T	Q	Q	L	I	A	K	V	S	H	T	I	K	S	I	.	.
Query Conservation																																																																																.	.
Alig confidence																															.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																															.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	P	Q	N	R	Q	I	F	I	Q	S	V	I	R	F	L	R	Q	Y	N	F	D	G	L	N	L	D	W	.	Q	Y	P	G	S	R	G	S	P	P	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	H	L	F	S	V	L	V	K	E	M	R	K	A	F	E	E	E	S	V
Template Known Secondary structure		S	S																		T	T		S							.	S		S	S	S	T	T			T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.																			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
					286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure		.	.	.																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	K	P	G	V	E	F	G	V	S	P	A	G	V	W	R	N	R	S	H	D	P	L	G	S	D	T	R	G	A	A	A	Y	D	E	S	Y	A	D	T	R	R	W	V	E	Q	G	L	L	D	Y	I	A	P	Q	I	Y	W	P	F	S	R	S	A	A	R	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Sequence		E	K	D	I	P	R	L	L	L	T	S	T	G	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	D	V	I	K	S	G	Y	K	I	P	E	L	S	.	.	Q	S	L	D	Y	I	Q	V	M	T	Y	D	L	H	D	P	K	D	G	Y	T	G	E	N	S	P	L	Y	K	S	P	Y
Template Known Secondary structure			T	T	S											S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S															.	.				S										S		G	G	G	S	B				S	S		S	S			T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.																	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
											351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.																				.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	Y	D	V	L	A	K	W	W	A	D	V	V	K	P	T	R	T	R	L	Y	I	G	I	A	F	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	E	P	S	K	I	E	P	D	W	M	I	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.												.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.
Template Sequence		D	I	G	K	S	A	D	L	N	V	D	S	I	I	S	Y	W	K	D	H	.	G	A	A	S	E	K	L	I	V	G	F	P	A	Y	G	H	T	F	I	L	S	D	P	S	K	T	G	I	G	A	P	T	I	S	T	G	P	P	G	K	Y	T	D	E	S	G	L	L	A	Y	Y	E	V	C	T	F	L	N	E
Template Known Secondary structure				G	G	G	G	G		S											T	.	T			G	G	G							S								S		T	T			S	T	T		B									T	T	T			S	S													T
Template Predicted Secondary structure																						.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
																									391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	G	V	P	E	L	K	K	Q	L	D	L	N	D	A	V	P	E	I	S	G	T	I	L	F	R	E	D	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																											.
Template Sequence		G	A	T	E	V	W	D	A	P	Q	E	V	P	Y	A	Y	Q	G	N	E	W	V	G	Y	D	N	V	R	S	F	K	L	K	A	Q	W	L	K	D	N	N	.	L	G	G	A	V	V	W	P	L	D	M
Template Known Secondary structure		T							T	T	T	T							T	T																		T	T	T	T		.		S						T	G	G	G
Template Predicted Secondary structure																																											.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions