Job Description P76119 Confidence 98.03% Date Thu Jan 5 12:19:12 GMT 2012 Rank 2 Aligned Residues 264 % Identity 14% Template d1musa_ SCOP info Ribonuclease H-like motif Ribonuclease H-like Transposase inhibitor (Tn5 transposase) Resolution 1.90

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		75	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.													.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure								.	.																																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.																																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	V	V	S	N	.	.	I	D	S	L	A	F	E	K	M	F	I	E	W	M	Q	E	C	H	E	I	T	D	G	E	I	I	A	I	D	G	K	T	I	R	G	S	F	D	K	G	K	R	K	.	.	.	.	.	.	.	.	.	.	.	.	G	A	I	H	M	V	S	A	F	S	N	E	N	G	V	V	L
Query Conservation								.	.																																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.																																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	R	F	I	R	N	P	N	V	S	A	E	A	I	R	K	A	G	A	M	Q	T	V	K	L	A	Q	E	F	P	E	L	L	A	I	E	D	T	T	S	L	S	Y	R	H	Q	V	A	E	E	L	G	K	L	G	S	I	Q	K	A	S	R	G	W	W	V	H	S	V	L	L	L	E	A	T	T	F	R	T	V
Template Known Secondary structure						T		T	T																			T	T		S															S	G	G	G	G	G	S	B		S	S	S	T	T		S														T	T	T
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		141													.	.	.	.	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.																																																	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.																																																	.	.	.	.	.	.
Query Sequence		G	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	K	T	E	A	K	S	N	.	.	.	.	E	I	T	A	I	P	E	L	L	N	L	L	Y	L	K	K	N	L	I	T	I	D	A	M	G	C	Q	K	D	I	A	S	K	I	K	D	K	K	A	D	Y	L	L	A	V	K	G	N	.	.	.	.	.	.
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.																																																	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.																																																	.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	L	H	Q	E	W	W	M	R	P	D	D	P	A	D	A	D	E	K	E	S	G	K	W	L	A	A	A	A	T	S	R	L	R	M	G	S	M	M	S	N	V	I	A	V	C	D	R	E	A	D	I	H	A	Y	L	Q	D	K	L	A	H	N	E	R	F	V	V	R	S	K	H	P	R	K	D	V	E	S
Template Known Secondary structure													S	S	G	G	G		S	S		G	G	G														G	G	G	G	G	G							G	G	G												T	T									S			B		T	T	T
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	K	L	H	H	A	F	E	E	K	F	P	V	N	V	F	S	N	Y	K	G	D	S	F	S	T	Q	E	I	S	H	G	R	K	E	T	R	L	H	I	V	S	N	V	T	R	L	N	F	C	D	F	E	F	E	W	K	G	L	K	K	L	C	V	A	L	S	F	R	Q	K	K	E	D	K	S	A	E	G
Query Conservation
Alig confidence												.																																					.	.													.	.
Template Conservation												.																																					.	.													.	.
Template Sequence		G	L	Y	L	Y	D	H	L	K	N	.	Q	P	E	L	G	G	Y	Q	I	S	I	P	Q	K	G	V	V	D	K	R	G	K	R	K	N	R	P	A	R	K	A	S	L	S	L	R	.	.	S	G	R	I	T	L	K	Q	G	N	I	T	.	.	L	N	A	V	L	A	E	E	I	N	P	P	K	G	E	T	P
Template Known Secondary structure			S	B							T	.	S																		S	S																	.	.							T	G	G	G			.	.										S			S	S	S
Template Predicted Secondary structure												.																																					.	.													.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.			.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290					.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure														.	.	.	.																																											.
Query SS confidence														.	.	.	.																																											.
Query Sequence		V	S	I	R	Y	Y	I	S	S	K	D	M	.	.	.	.	D	A	K	E	F	A	H	A	I	R	A	H	W	L	I	E	H	S	L	H	W	V	L	D	V	K	M	N	E	D	A	S	R	I	R	R	G	N	A	A	E	I	.	I	S	G	I	K	K	M	A	L	N	L	L	R
Query Conservation														.	.	.	.																																											.
Alig confidence					.									.	.	.	.																	.																										.
Template Conservation					.																													.
Template Sequence		L	K	W	.	L	L	L	T	S	E	P	V	E	S	L	A	Q	A	L	R	V	I	D	I	Y	T	H	R	W	R	I	E	.	E	F	H	K	A	W	K	T	G	A	G	A	E	R	Q	R	M	E	K	P	D	N	L	E	R	M	V	S	I	L	S	F	V	A	V	R	L	L	Q
Template Known Secondary structure					.					S	S			S	S													T	T					.								T	T	T		G	G	G				S	S
Template Predicted Secondary structure					.																													.
Template SS confidence
		296	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions