Job Description P76639 Confidence 92.29% Date Thu Jan 5 12:25:10 GMT 2012 Rank 143 Aligned Residues 184 % Identity 7% Template c3txmA_ PDB info PDB header:hydrolase, protein binding Chain: A: PDB Molecule:26s proteasome regulatory complex subunit p42b; PDBTitle: crystal structure of rpn6 from drosophila melanogaster, gd(3+) complex Resolution 3.00 Å

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		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.				.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.
Query SS confidence																																																																					.	.	.
Query Sequence		P	E	S	I	Y	R	A	M	T	I	F	D	R	L	Q	N	K	S	D	I	Q	T	L	K	T	E	C	Y	C	L	L	A	E	C	H	M	S	L	A	L	H	G	K	S	E	L	E	L	A	A	Q	K	A	L	E	L	L	D	Y	V	S	D	I	T	T	V	D	.	.	.	G	K	I	L	A	I	M	G	L	I
Query Conservation																																																																					.	.	.
Alig confidence																								.	.	.																																											.	.	.
Template Conservation																								.	.	.
Template Sequence		E	G	K	A	K	E	L	A	D	L	I	K	V	T	R	P	F	L	S	S	I	S	.	.	.	K	A	K	A	A	K	L	V	R	S	L	V	D	M	F	L	D	M	D	A	G	T	G	I	E	V	Q	L	C	K	D	C	I	E	W	A	K	Q	E	K	R	T	F	L	R	Q	S	L	E	A	R	L	I	A	L
Template Known Secondary structure		T	T																	T	T	S		.	.	.																	T	S																				T	T	T
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.				.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.							.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.							.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.																															.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.																															.	.	.	.	.	.
Query Sequence		T	G	L	S	G	Q	A	K	V	S	H	I	L	F	E	Q	A	K	I	H	S	T	D	I	.	.	.	.	.	.	A	S	L	Y	Y	Y	R	A	L	V	H	F	H	N	E	K	I	E	E	A	R	I	C	I	D	K	S	L	Q	L	.	.	.	.	.	.	E	P	R	R	R	K	A	V	V	I	K	E	C	V
Query Conservation																										.	.	.	.	.	.																															.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.																															.	.	.	.	.	.
Template Conservation
Template Sequence		Y	F	D	T	A	L	Y	T	E	A	L	A	L	G	A	Q	L	L	R	E	L	K	K	L	D	D	K	N	L	L	V	E	V	Q	L	L	E	S	K	T	Y	H	A	L	S	N	L	P	K	A	R	A	A	L	T	S	A	R	T	T	A	N	A	I	Y	C	P	P	K	V	Q	G	A	L	D	L	Q	S	G	I
Template Known Secondary structure						T																		T	S	S		T																	T	T																			S
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		416	.	.	.		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		D	M	Y	V	.	P	N	P	L	K	N	N	I	K	L	Y	Y	K	E	T	E	S	E	S	H	R	V	I	I	D	N	I	L	K	L	K	Q	L	T	R	I	C	M
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		L	H	A	A	D	E	R	D	F	K	T	A	F	S	Y	F	Y	E	A	F	E	G	F	D	S	V	D	S	V	K	A	L	T	S	L	K	Y	M	L	L	C	K	I
Template Known Secondary structure						T	T																		T	T	T
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions