Job Description P76639 Confidence 99.59% Date Thu Jan 5 12:25:10 GMT 2012 Rank 56 Aligned Residues 226 % Identity 10% Template c3mkrA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat Resolution 2.60 Å

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		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	S	Q	F	I	I	D	N	I	L	Q	T	V	H	K	P	E	R	S	V	R	L	A	K	Q	D	Q	G	Y	K	N	H	Y	L	S	D	E	M	L	A	G	K	K	E	L	Y	D	F	T	P	E	S	I	Y	R	A	M	T	I	F	D	R	L	Q	N	K	S	D	I	Q	T	L	K	T	E	C	Y	C	L
Query Conservation
Alig confidence																																																		.	.	.															.
Template Conservation																																																		.	.	.															.
Template Sequence		E	R	D	V	E	R	D	V	F	L	Y	R	A	Y	L	A	Q	R	K	Y	G	V	V	L	D	E	I	K	P	S	S	A	P	E	L	Q	A	V	R	M	F	A	E	Y	L	A	S	H	.	.	.	S	R	R	D	A	I	V	A	E	L	D	R	E	M	.	S	R	S	V	D	V	T	N	T	T	F	L	L	M
Template Known Secondary structure																		T	T									S		T	T	S																	S	.	.	.	T	T													.		S					S
Template Predicted Secondary structure																																																		.	.	.															.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.				.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.																					.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.			.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Query Sequence		L	A	E	C	H	M	S	L	A	L	H	G	K	S	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	A	A	Q	K	A	L	E	L	L	D	Y	V	S	D	I	T	T	V	D	G	K	I	L	A	I	M	G	L	I	T	G	L	S	.	.	G	Q	A	K	V	S	H
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Conservation
Template Sequence		A	A	S	I	Y	F	Y	D	Q	N	P	D	A	A	L	R	T	L	H	Q	G	D	S	L	E	C	M	A	M	T	V	Q	I	L	L	K	L	D	R	L	D	L	A	R	K	E	L	K	K	M	Q	D	Q	D	E	D	A	T	L	T	Q	L	A	T	A	W	V	S	L	A	A	G	G	E	K	L	Q	D	A	Y
Template Known Secondary structure									T	T										T	T			S														T	T																	T	T																	T	T
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430		.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		I	L	F	E	Q	A	K	I	H	S	T	D	I	A	S	L	Y	Y	Y	R	A	L	V	H	F	H	N	E	K	I	E	E	A	R	I	C	I	D	K	S	L	Q	L	E	P	R	R	R	K	A	V	V	I	K	E	C	V	D	M	Y	V	P	N	P	L	K	N	N	I	K	L	Y	.	Y	K	E	T	E	S	E
Query Conservation																																																																										.
Alig confidence																																																							.																			.
Template Conservation																																																							.
Template Sequence		Y	I	F	Q	E	M	A	D	K	C	S	P	T	L	L	L	L	N	G	Q	A	A	C	H	M	A	Q	G	R	W	E	A	A	E	G	V	L	Q	E	A	L	D	K	D	S	G	H	P	E	T	L	I	N	.	L	V	V	L	S	Q	H	L	G	K	P	P	E	V	T	N	R	Y	L	S	Q	L	K	D	A	H
Template Known Secondary structure											S																	T	T																	T	T								.								T	T
Template Predicted Secondary structure																																																							.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		438	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	H	R	V	I	I	D	N	I	L	K	L	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	S	H	P	F	I	K	E	Y	R	A	K	E	N
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions