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Job Description | P76639 | Confidence | 93.21% | Date | Thu Jan 5 12:25:10 GMT 2012 |
Rank | 141 | Aligned Residues | 107 |
% Identity | 11% | Template | c3mkqB_ |
PDB info |
PDB header:transport protein | Chain: B: PDB Molecule:coatomer subunit alpha; |
PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat
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Resolution | 2.50 Å |
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315 | . | . | . | . | 320 | . | . | . | . | . | . | |
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Predicted Secondary structure |   |
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Query Sequence |   |
E | L | E | L | A | A | Q | K | A | L | E | L | . |
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V | D | G | K | I | L | A | I | M | G | L | I | T | G | L | S | G | Q | A | K | V | S | H | I | L | F | E | Q | A | K | I | H | S | T | D | I | A | S | L | Y | Y | Y | R | A | L | V | H | F | H | N | E | K | I | E | E |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
D | P | H | I | R | F | D | L | A | L | E | Y | G | N | L | D | A | A | L | D | E | A | K | K | L | N | D | S | I | T | W | E | R | L | I | Q | E | A | L | A | Q | G | N | A | S | L | A | E | M | I | Y | Q | T | Q | . |
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H | S | F | D | K | L | S | F | L | Y | L | V | T | G | D | V | N | K |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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648 | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | |
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. | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . |
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391 | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
A | R | I | C | I | D | K | S | L | Q | L | E | P | R | R | R | K | A | V | V | I | K | E | C | V | D | M | Y | V | P | N | P | L | K | N | N | I | K | L | Y | Y | K | E | T | E |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
L | S | K | M | Q | N | I | A | Q | T | R | E | D | . |
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F | G | S | M | L | L | N | T | F | Y | N | N | S | T | K | E | R | S | S | I | F | A | E | G | G | S |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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720 | . | . | . | . | . | . | . | . | . | 730 | . | . | |
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. | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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