Job Description P76639 Confidence 100.00% Date Thu Jan 5 12:25:10 GMT 2012 Rank 1 Aligned Residues 294 % Identity 11% Template c3ly8A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:transcriptional activator cadc; PDBTitle: crystal structure of mutant d471e of the periplasmic domain of cadc Resolution 1.90 Å

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		126	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure										.	.	.	.
Query SS confidence										.	.	.	.
Query Sequence		T	T	S	L	N	T	L	D	.	.	.	.	P	L	I	L	N	Q	E	L	V	Q	I	I	S	N	K	K	I	D	G	L	Y	T	Y	P	M	A	A	T	N	F	C	N	D	H	I	S	Q	N	S	F	L	S	R	F	K	P	D	Y	F	V	T	G	R	I	N	Q	N	N	A	V	N	T	L	Y	I	E	L	I
Query Conservation										.	.	.	.
Alig confidence										.	.	.	.																			.	.																	.	.	.	.																.	.
Template Conservation																																.	.																	.	.	.	.																.	.
Template Sequence		C	N	S	W	S	S	P	Y	Q	L	S	Y	A	I	G	V	G	D	L	V	A	T	S	L	N	T	F	S	T	F	.	.	M	V	H	D	K	I	N	Y	N	I	D	E	P	S	S	S	.	.	.	.	G	K	T	L	S	I	A	F	V	N	Q	R	Q	Y	R	.	.	A	Q	Q	C	F	M	S	I	K	L	V
Template Known Secondary structure		S	S	S	S			T	T																				S	S		.	.						T	T										.	.	.	.													S	S	T	.	.	T
Template Predicted Secondary structure																																.	.																	.	.	.	.																.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.					.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.																															.
Query SS confidence																.	.																															.
Query Sequence		D	A	K	N	L	F	L	I	A	S	N	H	L	P	.	.	V	D	E	L	H	N	T	S	Q	F	I	I	D	N	I	L	Q	T	V	H	K	P	E	R	S	V	R	L	A	K	.	Q	D	Q	G	Y	K	N	H	Y	L	S	D	E	M	L	A	G	K	K	E	L	Y	D	F	T	P	E	S	I	Y	R	A	M
Query Conservation																.	.																															.
Alig confidence																.	.																															.
Template Conservation
Template Sequence		D	N	A	D	G	S	T	M	L	D	K	R	Y	V	I	T	N	G	N	Q	L	A	I	Q	N	D	L	L	E	S	L	S	K	A	L	N	Q	P	W	P	Q	R	M	Q	E	T	L	Q	K	I	L	P	H	R	G	A	L	L	T	N	F	Y	Q	A	H	D	Y	L	L	H	G	D	D	K	S	L	N	R	A	S
Template Known Secondary structure			T	T	T													S	S	T																T	T															S		S	S	G	G	G															S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		T	I	F	D	R	L	Q	N	K	S	D	I	Q	T	L	K	T	E	C	Y	C	L	L	A	E	C	H	M	S	L	A	L	H	G	.	K	S	E	L	E	L	A	A	Q	K	A	L	E	L	L	D	Y	V	S	D	I	T	T	V	D	G	K	I	L	A	I	M	G	L	I	T	G	L	S	G	Q	A	K	V	S
Query Conservation																																				.
Alig confidence										.	.	.																								.
Template Conservation										.	.	.
Template Sequence		E	L	L	G	E	I	V	Q	.	.	.	S	S	P	E	F	T	Y	A	R	A	E	K	A	L	V	D	I	V	R	H	S	Q	H	P	L	D	E	K	Q	L	A	A	L	N	T	E	I	D	N	I	V	T	L	P	E	L	N	N	L	S	I	I	Y	Q	I	K	A	V	S	A	L	V	K	G	K	T	D	E	S
Template Known Secondary structure										.	.	.			T	T																			S																			T		G	G	G	T	T																T
Template Predicted Secondary structure										.	.	.
Template SS confidence
		360	.	.	.	.	.	.	.				.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	L	F	E	Q	A	K	I	H	S	T	D	I	A	S	L	Y	Y	Y	R	A	L	V	H	F	H	N	E	K	I	E	E	A	R	I	C	I	D	K	S	L	Q	L	E	P	R	R	R	K	A	V	V	I	K	E	C	V	D	M	Y	V	P	N	P	L	K	N	N	I	K	L	Y	Y	K	E	T
Query Conservation
Alig confidence																		.																																										.	.	.
Template Conservation																		.																																										.	.	.
Template Sequence		Y	Q	A	I	N	T	G	I	D	L	E	M	S	W	L	N	.	Y	V	L	L	G	K	V	Y	E	M	K	G	M	N	R	E	A	A	E	A	Y	L	T	A	F	N	L	R	P	G	A	N	T	L	Y	W	I	E	N	G	I	.	.	.	F	Q	T	S	V	P	Y	V	V	P	Y	L	D	K	F	L
Template Known Secondary structure																		.											T	T																S		S										S	S	.	.	.	S
Template Predicted Secondary structure																		.																																										.	.	.
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.		.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.				.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions