Job Description P76639 Confidence 99.36% Date Thu Jan 5 12:25:10 GMT 2012 Rank 83 Aligned Residues 155 % Identity 12% Template c2uy1A_ PDB info PDB header:rna-binding protein Chain: A: PDB Molecule:cleavage stimulation factor 77; PDBTitle: crystal structure of cstf-77 Resolution 2.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	E	S	I	Y	R	A	M	T	I	F	D	R	L	Q	N	K	S	D	I	Q	T	L	K	T	E	C	Y	C	L	L	A	E	C	H	M	S	L	A	L	H	G	K	S	E	L	E	L	A	A	Q	K	A	L	E	L	L	D	Y	V	S	D	I	T	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.																							.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.																							.	.	.	.	.	.	.	.	.
Template Sequence		R	P	H	E	S	R	M	H	F	I	H	N	Y	I	L	D	.	.	.	S	F	Y	Y	A	E	E	V	Y	F	F	Y	S	E	Y	L	I	G	I	G	Q	K	.	.	.	.	.	.	.	.	.	E	K	A	K	K	V	V	E	R	G	I	E	M	S	D	G	M	F	L	S	L	Y	Y	G	L	V	M	D	E	E
Template Known Secondary structure																		.	.	.		T	T	T															T	T			.	.	.	.	.	.	.	.	.																S	S										T	T		T
Template Predicted Secondary structure																		.	.	.																							.	.	.	.	.	.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.				.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.										230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
																	337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	K	I	L	A	I	M	G	L	I	T	G	L	S	G	Q	A	K	V	S	H	I	L	F	E	Q	A	K	I	H	S	T	D	I	A	S	L	Y	Y	Y	R	A	L	V	H	F	H	N	E	K	I	E	E	A	R	I	C	I	D	K	S	L	Q	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	Y	G	D	L	K	R	K	Y	S	F	S	K	E	L	D	L	L	R	I	N	H	L	N	Y	V	L	K	K	R	G	L	E	L	F	R	K	L	F	I	E	L	G	N	E	G	V	G	P	H	V	F	I	Y	C	A	F	I	E	Y	Y	A	T	G	S	R	A	T	P	Y	N	I	F	S	S	G	L	L	K
Template Known Secondary structure											T																																		T	T	S																					S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	P	R	R	R	K	A	V	V	I	K	E	C	V	D	M	Y	V	P	N	P	L	K	N	N	I	K	L	Y	Y	K	E	T	E	S	E	S
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		H	P	D	S	T	L	L	K	E	E	.	F	F	L	F	L	L	R	I	G	D	E	E	N	A	R	A	L	F	K	R	L	E	K	T	S	R
Template Known Secondary structure			T	T								.									T												S			B
Template Predicted Secondary structure												.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions