Job Description P76639 Confidence 99.67% Date Thu Jan 5 12:25:10 GMT 2012 Rank 41 Aligned Residues 188 % Identity 12% Template c2ho1B_ PDB info PDB header:protein binding Chain: B: PDB Molecule:type 4 fimbrial biogenesis protein pilf; PDBTitle: functional characterization of pseudomonas aeruginosa pilf Resolution 2.00 Å

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		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.																										.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	L	S	D	E	M	L	A	G	K	K	E	L	Y	D	F	T	P	E	S	I	Y	R	A	M	T	I	F	D	R	L	Q	N	K	S	D	I	Q	T	L	K	T	E	C	Y	C	L	L	A	E	C	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	S	L
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.																.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.																.	.	.
Template Sequence		A	R	D	A	Y	I	Q	L	G	L	G	Y	L	Q	R	.	.	.	G	N	T	E	Q	A	K	V	P	L	R	K	A	L	E	.	.	.	I	D	P	S	S	A	D	A	H	A	A	L	A	V	V	F	Q	T	E	X	E	P	K	L	A	D	E	E	Y	R	K	A	L	A	S	D	S	R	N	A	R	V	L	N
Template Known Secondary structure															T	T	.	.	.	T															.	.	.			T	T															T	T															S	S	S
Template Predicted Secondary structure																	.	.	.																.	.	.
Template SS confidence
		1036	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050				.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.				.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.			.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		A	L	H	G	K	S	E	L	E	L	A	A	Q	K	A	L	E	L	L	D	Y	V	S	D	.	.	I	T	T	V	D	G	K	I	L	A	I	M	G	L	I	T	G	L	S	G	Q	A	K	V	S	H	I	L	F	E	Q	A	K	I	H	S	T	D	I	A	S	L	Y	Y	Y	R	A	L	V	H	F	H	N	E
Query Conservation																										.	.
Alig confidence																										.	.
Template Conservation
Template Sequence		N	Y	G	G	F	L	Y	E	Q	K	R	Y	E	E	A	Y	Q	R	L	L	E	A	S	Q	D	T	L	Y	P	E	R	S	R	V	F	E	N	L	G	L	V	S	L	Q	X	K	K	P	A	Q	A	K	E	Y	F	E	K	S	L	R	L	N	R	N	Q	P	S	V	A	L	E	X	A	D	L	L	Y	K	E	R
Template Known Secondary structure										T	T													T	T		T	T		T	T															T	T																	S																T	T
Template Predicted Secondary structure
Template SS confidence
		1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	E	E	A	R	I	C	I	D	K	S	L	Q	L	E	P	R	R	R	K	A	V	V	I	K	E	C	V	D	M	Y	V	P	N	P	L	K	N	N	I	K	L	Y	Y	K	E	T	E	S	E	S	H	R	V	I	I	D	N	I	L	K
Query Conservation
Alig confidence																											.
Template Conservation																											.
Template Sequence		E	Y	V	P	A	R	Q	Y	Y	D	L	F	A	Q	G	G	G	Q	N	A	R	S	L	L	L	.	G	I	R	L	A	K	V	F	E	D	R	D	T	A	A	S	Y	G	L	Q	L	K	R	L	Y	P	G	S	L	E	Y	Q	E	F	Q	A
Template Known Secondary structure															T	T											.								T	T																	S	S	S
Template Predicted Secondary structure																											.
Template SS confidence
		1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.		.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions