Job Description P76639 Confidence 44.90% Date Thu Jan 5 12:25:10 GMT 2012 Rank 203 Aligned Residues 81 % Identity 11% Template c2dl1A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:spartin; PDBTitle: solution structure of the mit domain from human spartin Resolution UNK

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		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.									.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.
Query Sequence		E	L	A	A	Q	K	A	L	E	L	L	D	Y	V	S	D	I	T	T	V	D	G	K	I	L	A	I	M	G	L	I	T	G	L	S	G	Q	A	K	V	S	H	I	L	F	E	Q	A	K	I	H	S	T	D	I	A	.	.	.	.	.	.	.	.	S	L	Y	Y	Y	R	A	L	V	H	F	H	N	E	K	I
Query Conservation																																																										.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.
Template Sequence		R	E	A	Y	K	K	A	F	L	F	V	N	K	G	L	N	T	D	E	.	.	.	.	.	.	.	.	L	G	Q	K	E	E	A	K	N	Y	Y	K	Q	G	I	G	H	L	L	R	G	I	S	I	S	S	K	E	S	E	H	T	G	P	G	W	E	S	A	R	Q	M	Q	Q	K	M	K	E	T	L	Q	N	V
Template Known Secondary structure																					.	.	.	.	.	.	.	.		T																					S	S					T	T				S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.									.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	A	R	I	C	I	D	K	S	L	Q	L	E	P	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	T	R	L	E	I	L	E	K	G	L	A	T	S	L	Q	N
Template Known Secondary structure														S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions