Job Description P76639 Confidence 88.79% Date Thu Jan 5 12:25:10 GMT 2012 Rank 152 Aligned Residues 45 % Identity 20% Template c1h0mD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna Resolution 3.0 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	P	Q	K	E	L	G	V	L	I	V	L	L	E	S	A	G	H	V	V	L	K	D	M	I	I	E	S	V	W	K	N	I	I	V	S	D	E	S	L	T	R	C	I	Y	S	L	R	C	I	F	E
Query Conservation
Alig confidence																		.	.	.	.										.	.	.	.
Template Conservation																		.	.	.	.										.	.	.	.
Template Sequence		W	L	D	P	K	E	A	T	Y	L	R	W	I	A	V	G	.	.	.	.	K	T	X	E	E	I	A	D	V	.	.	.	.	E	G	V	K	Y	N	S	V	R	V	K	L	R	E	A	X	K	R	F	D
Template Known Secondary structure															T	T	T	.	.	.	.										.	.	.	.	T	T																		T
Template Predicted Secondary structure																		.	.	.	.										.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.					.	190	.	.	.	.	.	.	.					.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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