Job Description P0ABK9 Confidence 100.00% Date Thu Jan 5 11:15:44 GMT 2012 Rank 9 Aligned Residues 365 % Identity 26% Template c3f29A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:eight-heme nitrite reductase; PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite Resolution 2.00 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.					.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure															.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	P	D	Q	Y	L	S	W	K	A	T	S	E	.	.	.	.	Q	S	E	R	V	D	A	L	A	E	D	P	R	L	V	I	L	W	A	G	Y	P	F	S	R	D	Y	N	K	P	R	G	H	A	F	A	V	T	D	V	R	E	T	L	R	T	G	A	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation															.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	T	A	Q	F	N	S	F	V	E	V	R	H	E	S	H	P	R	L	E	K	A	T	P	T	S	R	S	P	M	F	D	K	L	I	A	G	H	G	F	A	F	E	H	A	E	P	R	S	H	A	F	M	L	V	D	H	F	V	V	D	R	A	Y	G	G	R	F	Q	F	K	N	W	Q	K	V	T	D	G	M
Template Known Secondary structure														T	T	S		T	T		B	S	S	S	T	T	S	S		T	T						T	T	S	G	G	G	G			B					G	G	G								S	T	T	T	S	T	T					S	S	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
																										112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	E	D	G	P	L	P	M	A	C	W	S	C	K	S	P	D	V	A	R	L	I	Q	K	D	G	E	D	G	Y	F	H	.	.	.	.	.	G	K	W	A	R	G	G	P	E	I	V	N	N	L	G	C	A	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Template Conservation
Template Sequence		G	A	V	R	G	A	W	T	V	L	T	D	A	D	P	E	S	S	D	Q	R	R	F	L	S	Q	T	A	T	A	A	N	P	V	C	L	N	C	K	T	Q	D	H	I	L	D	W	A	Y	M	G	D	E	H	E	A	A	K	W	S	R	T	S	E	V	V	E	F	A	R	D	L	N	H	P	L	N	C	F	M
Template Known Secondary structure							G	G	G	T				S		T	T			S				S	S	T	T											T	T	T			T	T	T	T	T	B		G	G	G				T	T		S	B		T	T	S							T	T				S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.																												.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	H	N	T	A	S	P	E	F	A	K	G	K	P	E	L	T	L	S	R	P	Y	A	A	R	A	M	E	A	I	G	K	P	F	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	R	F	D	Q	Q	S	M	V	C	G	Q	C	H	V	E
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.
Template Sequence		C	H	D	P	H	S	.	.	.	.	.	.	.	A	G	P	R	V	V	R	D	G	L	I	N	A	V	V	D	R	G	L	G	T	Y	P	H	D	P	V	K	S	E	Q	Q	G	M	T	K	V	T	F	Q	R	G	R	E	D	F	R	A	I	G	L	L	D	T	A	D	S	N	V	M	C	A	Q	C	H	V	E
Template Known Secondary structure		T	B		T	T	T	.	.	.	.	.	.	.			B												T	T	T				S	S	T	T								T										T	T										S	S								T	T	T	S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.								.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		216	.	.	.	220	.	.	.	.	.	.														.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	Y	F	D	G	K	N	K	A	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	W	D	D	G	M	K	V	E	N	M	E	Q	Y	Y	D	K	I	A	F	S	D	W	T	N	S	L	S	K	T	P	M	L	K	A	Q	H	P	E	Y	E	T	W	T	A	G	I	H	G	K	N	N	V	T	C
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.
Template Conservation																																.	.	.
Template Sequence		Y	N	C	N	P	G	Y	Q	L	S	D	G	S	R	V	G	M	D	D	R	R	A	N	H	F	F	W	A	N	V	.	.	.	F	D	Y	K	E	A	A	Q	E	I	D	F	F	D	F	R	H	A	T	T	G	A	A	L	P	K	L	Q	H	P	E	A	E	T	F	W	G	S	V	H	E	R	N	G	V	A	C
Template Known Secondary structure					S					T	T	T						T	T	S	G	G	G	S								.	.	.										T	T		B					T	T	T																T	T	S					T	T
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.				.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		I	D	C	H	M	P	K	V	Q	N	A	E	G	K	L	Y	T	D	H	K	I	G	N	P	F	D	N	F	A	Q	T	C	A	N	C	H	T	Q	.	D	K	A	A	L	Q	K	V	V	A	E	R	K	Q	S	I	N	D	L	K	I	K	V	E	D	Q	L	V	H	A	H	F	E	A	K	A	A	L	D	A	G
Query Conservation																																								.
Alig confidence																																								.
Template Conservation
Template Sequence		A	D	C	H	M	P	K	V	Q	L	E	N	G	K	V	Y	T	S	H	S	Q	R	T	P	R	D	M	M	G	Q	A	C	L	N	C	H	A	E	W	T	E	D	Q	A	L	Y	A	I	D	Y	I	K	N	Y	T	H	G	K	I	V	K	S	E	Y	W	L	A	K	M	I	D	L	F	P	V	A	K	R	A	G
Template Known Secondary structure						S		B				S	S	S				B							G	G	G	G					T	T	T	T		T	T																																									T	T
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	E	A	E	M	K	P	I	Q	D	D	I	R	H	A	Q	W	R	W	D	L	A	I	A	S	H	G	I	H	M	H	A	P	E	E	G	L	R	M	L	G	T	A	M	D	K	A	A	D	A	R	T	K	L	A	R	L	L	A	T	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	E	D	V	L	N	Q	A	R	E	L	H	Y	D	A	H	L	Y	W	E	W	W	T	A	E	N	S	V	G	F	H	N	P	D	Q	A	R	E	S	L	M	T	S	I	S	K	S	K	E	A	V	S	L	L	N	D	A	I	D	A	Q
Template Known Secondary structure																											S	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.