Job Description P0ABK9 Confidence 95.22% Date Thu Jan 5 11:15:44 GMT 2012 Rank 33 Aligned Residues 160 % Identity 17% Template c2jblC_ PDB info PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center cytochrome c PDBTitle: photosynthetic reaction center from blastochloris viridis Resolution 2.4 Å

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		122	.	.	.	.	.	.												.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.												.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	W	S	C	K	S	P	.	.	.	.	.	.	.	.	.	.	.	D	V	A	R	L	I	Q	K	D	G	E	D	G	Y	F	H	G	K	W	A	R	G	G	P	E	I	V	N	N	L	G	C	A	D	C	H	.	.	.	.	.	.	.	.	.	.	.	N	T	A	S	P	E	F	A	K	G	K	P	E	L	T
Query Conservation									.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.										.	.																	.	.								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.																	.	.
Template Sequence		C	T	Y	C	H	D	E	N	N	L	A	S	E	A	K	Y	P	Y	V	V	A	R	R	M	L	E	M	.	.	T	R	A	I	N	T	N	W	T	Q	H	V	A	Q	T	G	.	.	V	T	C	Y	T	C	H	R	G	T	P	L	P	P	Y	V	R	Y	L	E	P	T	L	P	L	N	N	R	E	T	P	T	H
Template Known Secondary structure		G	G	G	T	S	B	T	T	B	T	T				S													.	.													T	T	T		.	.								T	T	S	S	S		S	S		B		S	S			S	S	S	S	T	T	S				T
Template Predicted Secondary structure																													.	.																	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.						220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																										.	.	.	.	.																																			.
Query SS confidence																																										.	.	.	.	.																																			.
Query Sequence		L	S	R	P	Y	A	A	R	A	M	E	A	I	G	K	P	F	E	K	A	G	R	F	D	Q	Q	S	M	V	C	G	Q	C	H	V	E	Y	Y	F	D	.	.	.	.	.	G	K	N	K	A	V	K	F	P	W	D	D	G	M	K	V	E	N	M	E	Q	Y	Y	D	K	I	A	F	S	D	W	T	N	S	.
Query Conservation																																										.	.	.	.	.																																			.
Alig confidence															.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.																																			.
Template Conservation															.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	R	V	E	T	R	S	G	Y	V	V	R	.	.	.	.	.	.	.	.	.	.	L	A	K	Y	T	A	Y	S	A	L	N	Y	D	P	F	T	M	F	L	A	N	D	K	R	Q	V	R	V	V	P	Q	T	A	L	P	L	V	G	V	S	R	G	K	E	R	R	P	L	S	D	A	Y	A	T	F	A	L
Template Known Secondary structure		T	T	S	T	T		G	G	G					.	.	.	.	.	.	.	.	.	.					T	T	T												T	S		S		S					S		S	S	S	S			T	T	T	S	S	G	G	G	S			T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.											.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
								254	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270		.	.	.	.	.	.																																					.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.														.					.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.														.					.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	L	S	K	T	P	M	L	K	A	Q	H	P	E	.	Y	E	T	W	.	T	A	G	I	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	N	V	T	C	I	D	C	H	M	P	K
Query Conservation		.	.	.	.	.	.														.					.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.														.					.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	M	S	I	S	D	S	L	G	T	N	C	T	F	C	H	N	A	Q	T	F	E	S	W	G	K	K	S	T	P	Q	R	A	I	A	W	W	G	I	R	M	V	R	D	L	N	M	N	Y	L	A	P	L	N	A	S	L	P	A	S	R	L	G	R	Q	G	E	A	P	Q	A	D	C	R	T	C	H	Q	G	V
Template Known Secondary structure										T			G	G	G	T	B		G	G	G	T	T			G	G	G	B																					T	T	G	G	G	G	G	T	S		G	G	G	S		T	T	S				B								T	T	S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	N	A	E	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	P	L	F	G
Template Known Secondary structure		S	S	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions