Job Description P0ABK9 Confidence 100.00% Date Thu Jan 5 11:15:44 GMT 2012 Rank 3 Aligned Residues 444 % Identity 32% Template c2j7aE_ PDB info PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris Resolution 2.3 Å

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		22	.	.	.	.	.	.	.	30	.	.					.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.																				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	S	V	H	A	E	Q	T	A	A	P	.	.	.	.	A	K	P	V	T	V	E	A	K	N	E	T	F	A	P	Q	H	P	D	Q	Y	L	S	W	K	A	T	S	E	Q	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	V	D	A	L	A	E	D	P	R	L	V	I	L
Query Conservation													.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	C	S	D	V	S	T	E	L	K	T	P	V	Y	K	T	K	L	T	A	E	E	I	R	N	S	A	F	K	P	E	F	P	K	Q	Y	A	S	Y	E	R	N	D	E	T	T	V	M	T	E	Y	K	G	S	V	P	F	N	K	N	D	N	V	N	P	L	P	E	G	Y	R	H	A	Q	P	Y	L	K	N	L
Template Known Secondary structure								S	S									S			T	T				G	G	G	G	T	T	T										G	G	G					B		S	S		B	S				B	T	T		S	S	S		T	T	T			S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.				.
Predicted Secondary structure																																																																														.	.	.
Query SS confidence																																																																														.	.	.
Query Sequence		W	A	G	Y	P	F	S	R	D	Y	N	K	P	R	G	H	A	F	A	V	T	D	V	R	E	T	L	R	T	G	A	P	K	N	A	E	D	G	P	L	P	M	A	C	W	S	C	K	S	P	D	V	A	R	L	I	Q	K	D	G	E	D	G	Y	F	H	G	K	W	A	R	G	G	P	E	I	.	.	.	V
Query Conservation																																																																														.	.	.
Alig confidence																																.	.																													.																.	.	.
Template Conservation																																.	.																													.
Template Sequence		W	L	G	Y	P	F	M	Y	E	Y	R	E	A	R	G	H	T	Y	A	I	Q	D	F	L	H	I	D	R	I	N	.	.	R	Y	A	E	K	G	G	L	P	A	T	C	W	N	C	K	T	P	K	M	M	E	W	V	K	E	S	G	.	D	G	F	W	A	K	D	V	N	E	F	R	D	K	I	D	M	K	D
Template Known Secondary structure		T	T	T	S	G	G	G	T			B					G	G	G									T	T	S		.	.		S	S	S	S		S	S	B	G	G	G	G	T	T	T		T	T									G	.	G	G	S	T	T	S	B	G	G	G	G	T	T	S			T	T	T
Template Predicted Secondary structure																																.	.																													.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.					.	.	.	.	.	.	230	.
Predicted Secondary structure																																																																						.	.	.	.
Query SS confidence																																																																						.	.	.	.
Query Sequence		N	N	L	G	C	A	D	C	H	N	T	A	S	P	E	F	A	K	G	K	P	E	L	T	L	S	R	P	Y	A	A	R	A	M	E	A	I	G	K	P	F	E	K	A	G	R	F	D	Q	Q	S	M	V	C	G	Q	C	H	V	E	Y	Y	F	D	G	K	N	K	.	.	.	.	A	V	K	F	P	W	D	D
Query Conservation																																																																						.	.	.	.
Alig confidence															.	.	.	.	.	.	.																																																	.	.	.	.
Template Conservation															.	.	.	.	.	.	.
Template Sequence		H	T	I	G	C	A	T	C	H	D	P	Q	T	.	.	.	.	.	.	.	M	E	L	R	I	T	S	V	P	L	T	D	Y	L	V	S	Q	G	K	D	P	K	K	L	P	R	N	E	M	R	A	L	V	C	G	Q	C	H	V	E	Y	Y	F	N	G	P	T	M	G	V	N	K	K	P	V	F	P	W	A	E
Template Known Secondary structure		T	S	S	T	G	G	G	T	B		T	T	T	.	.	.	.	.	.	.			B														T	T			T	T	S										T	G	G	G	T	S	S							T	T	S	S	S	T	T							T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.								.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.											.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.
Query Sequence		G	M	K	V	E	N	M	E	Q	Y	Y	D	K	.	.	.	.	.	.	.	.	.	.	I	A	F	S	D	W	T	N	S	L	S	K	T	P	M	L	K	A	Q	H	P	E	Y	E	T	W	T	A	G	I	H	G	K	N	N	V	T	C	I	D	C	H	M	P	K	V	Q	N	A	E	G	K	L	Y	T	D	H
Query Conservation															.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	F	D	P	A	D	M	Y	R	Y	Y	D	K	H	G	D	L	Q	V	K	G	F	E	G	K	F	A	D	W	T	H	P	A	S	K	T	P	M	I	K	A	Q	H	P	E	Y	E	T	W	I	N	G	T	H	G	A	A	G	V	T	C	A	D	C	H	M	S	Y	T	R	S	D	D	K	K	K	I	S	S	H
Template Known Secondary structure			S	S											S					S	T	T		T	T				S				T	T	T																T	T	S	T	T	T	T	T	T								S						S	T	T
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		302	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.						.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure											.											.																																												.	.	.	.	.
Query SS confidence											.											.																																												.	.	.	.	.
Query Sequence		K	I	G	N	P	F	D	N	F	.	A	Q	T	C	A	N	C	H	T	Q	.	D	K	A	A	L	Q	K	V	V	A	E	R	K	Q	S	I	N	D	L	K	I	K	V	E	D	Q	L	V	H	A	H	F	E	A	K	A	A	L	D	A	G	A	T	.	.	.	.	.	E	A	E	M	K	P	I	Q	D	D	I
Query Conservation											.											.																																												.	.	.	.	.
Alig confidence											.											.																																												.	.	.	.	.
Template Conservation
Template Sequence		W	W	T	S	P	M	K	D	P	E	M	R	A	C	R	Q	C	H	S	D	K	T	P	D	Y	L	K	S	R	V	L	F	T	Q	K	R	T	F	D	L	L	L	A	A	Q	E	V	S	V	K	A	H	E	A	V	R	L	A	N	E	Y	Q	G	A	K	A	A	G	Y	D	D	L	M	I	Q	A	R	E	M	V
Template Known Secondary structure				S		G	G	G		T	T						T	T		T	T	S																																							T			S				T	T
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.				.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure																																																												.	.	.
Query SS confidence																																																												.	.	.
Query Sequence		R	H	A	Q	W	R	W	D	L	A	I	A	S	H	G	I	H	M	H	A	P	E	E	G	L	R	M	L	G	T	A	M	D	K	A	A	D	A	R	T	K	L	A	R	L	L	A	T	K	G	I	T	H	E	I	Q	I	P	.	.	.	D	I	S	T	K	E	K	A	Q	Q	A	I	G	L	N	M	E	Q	I
Query Conservation																																																												.	.	.
Alig confidence																																								.																				.	.	.
Template Conservation																																								.
Template Sequence		R	K	G	Q	F	F	W	D	Y	V	S	A	E	N	S	V	G	F	H	N	P	A	K	A	L	D	T	L	A	Q	S	Q	Q	F	S	Q	K	A	.	I	D	L	A	M	E	A	T	Q	Y	G	I	G	K	D	L	S	G	D	I	K	T	I	V	P	P	I	L	K	M	N	R	K	L	Q	Q	D	P	E	F	M
Template Known Secondary structure													T	S	T	T	T	T	S	S																				.								T	T	T	T	T	G	G	G	S		S						S								T	T	G	G	G		T	T	G	G
Template Predicted Secondary structure																																								.
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.		.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	E	K	Q	D	F	I	K	T	V	I	P	Q	W	E	E	Q	A	R	K	N	G	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	H	K	W	F	Q	Y	L	P	V	L	P	K	A	D	Q	V	W	D	G	Q	K	R	L
Template Known Secondary structure		G	S	S	T	T	G	G	G	S												T	T
Template Predicted Secondary structure
Template SS confidence
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.