Job Description P0ABK9 Confidence 96.35% Date Thu Jan 5 11:15:44 GMT 2012 Rank 26 Aligned Residues 139 % Identity 20% Template c2e84A_ PDB info PDB header:electron transport Chain: A: PDB Molecule:high-molecular-weight cytochrome c; PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (miyazaki f) in the presence3 of zinc ion Resolution 2.70 Å

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		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	C	W	S	C	K	S	P	D	V	A	R	L	I	Q	K	D	G	E	D	G	Y	F	H	G	K	W	A	R	G	G	P	E	I	V	N	N	L	G	C	A	D	C	H	N	T	A	S	P	E	F	A	K	G	K	P	E	L	T	L	S	R	P	Y	A	A	R	A	M	E	A	I	G	K	P	F	E	K	A
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Sequence		A	N	C	I	G	C	H	T	E	Q	A	K	.	.	.	.	.	.	.	.	A	G	K	K	T	G	P	.	.	.	.	.	.	.	.	.	Q	D	G	E	C	R	S	C	H	N	P	K	P	.	.	.	.	.	.	.	M	A	S	S	W	K	Q	I	G	L	D	K	S	L	H	F	R	H	V	A	A	K	A	I
Template Known Secondary structure														.	.	.	.	.	.	.	.	T	T						.	.	.	.	.	.	.	.	.		T	T						S		S	S		.	.	.	.	.	.	.																				S		T	T	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.									.	.	130	.	.	.	.										.	.	.	.	.	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	F	D	Q	Q	S	M	V	C	G	Q	C	H	V	E	Y	Y	F	D	G	K	N	K	A	V	K	F	P	W	D	D	G	M	K	V	E	N	M	E	Q	Y	Y	D	K	I	A	F	S	D	W	T	N	S	L	S	K	T	P	M	L	K	A	Q	H	P	E	Y	E	T	W	T	A	G	I	H	G	K	N	N
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	P	V	N	D	P	Q	K	N	C	G	A	C	H	H	V	Y	D	E	A	A	K	K	L	S	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	N	K	E	D	S	C	R	A	C	H	G	D	A	R	V	E	K	K	P	S	L	R	E	A	A	H
Template Known Secondary structure					S	S	S	S			G	G	G	T						T	T	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T											S	S			S	S	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.																											.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	C	I	D	C	H	M	P	K	V	Q	N	A	E	G	K	L	Y	T	D	H	K	I	G	N	P	F	D	N	F	A	Q	T	C	A	N	C	H	T
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Q	C	I	T	C	H	R	S	V	A	A	A	P	A	K	A	.	.	.	.	.	.	.	.	.	.	.	D	S	G	P	V	S	C	A	G	C	H	D
Template Known Secondary structure														S	T	T			.	.	.	.	.	.	.	.	.	.	.						S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.												.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions