 |
Job Description | P0ABK9 | Confidence | 80.33% | Date | Thu Jan 5 11:15:44 GMT 2012 |
Rank | 56 | Aligned Residues | 54 |
% Identity | 24% | Template | c1jmxA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:amine dehydrogenase; |
PDBTitle: crystal structure of a quinohemoprotein amine dehydrogenase2 from pseudomonas putida
|
Resolution | 1.90 Å |
|
 |
  |   |
282 | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
Query Sequence |   |
C | I | D | C | H | M | P | K | V | Q | N | A | E | G | K | L | Y | T | D | H | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | G |
Query Conservation |   |
|   |   |
|
|
|
|   |   |   |   |   |   |
|   |   |   |
|   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
Template Conservation |   |
|   |   |
|
|   |   |   |   |   |
|   | . |
|
|
|
|
|   |   |
|
|
|
|
|
|
|   |
|
|
|   |
|
|   |   |   |
|
|
|   |
|
|   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |   |   |
|
|
|
|
|
|   |
|
|   |   |
|
Template Sequence |   |
C | M | G | C | H | I | P | E | G | N | D | T | . |
Y | S | R | I | S | H | Q | R | K | T | P | E | G | W | L | M | S | I | A | R | M | Q | V | M | H | G | L | Q | I | S | D | D | D | R | R | T | L | V | K | Y | L | A | D | K | Q | G | L | A | P | S | E | T | D | G | V | R | Y | A | M | E | R | R | L | N | T | V | E |
Template Known Secondary structure |   |
 | B | T | T | B |
|  |  |  | T | T |  | . |  | T | T | G | G | G |
|  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|
| G | G | G | S | T | T |
| T | T | T | T | T | T |
| T | T |
|
|
|
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|
| . |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
12 | . | . | . | . | . | . | . | 20 | . | . | . | |
. | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 |
  |
  |   |
305 | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | P | F | D | N | F | A | Q | T | C | A | N | C | H | T | Q | . |
. |
. |
. |
. |
. |
. |
. |
D | K | A | A | L | Q | K | V | V | A | E | R | K | Q | S | I |
Query Conservation |   |
  |
|   |   |   |   |   |   |
|
|   |   |
|
|   |   | . | . | . | . | . | . | . | . |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |   |   |
|   |
|
|
|
|   |
|
|
|   |
|
|
|
|
|   |   |
|
|   |   |
|
|
|
|
|
|
|
|   |
Template Sequence |   |
Q | F | D | T | Q | L | S | E | T | C | G | R | C | H | S | G | A | R | V | A | L | Q | R | R | P | A | K | E | W | E | H | L | V | N | F | H | L | G | Q | W |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |  | S | S | S | S |
| S |  |  |  |  | T |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
91 | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|