Job Description P0ABK9 Confidence 100.00% Date Thu Jan 5 11:15:44 GMT 2012 Rank 4 Aligned Residues 436 % Identity 48% Template c1fs9A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex Resolution 2.00 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	P	V	T	V	E	A	K	N	E	T	F	A	P	Q	H	P	D	Q	Y	L	S	W	K	A	T	S	E	Q	S	E	R	V	D	A	L	A	E	D	P	R	L	V	I	L	W	A	G	Y	P	F	S	R	D	Y	N	K	P	R	G	H	A	F	A	V	T	D	V	R	E	T	L	R	T	G	A	P	K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Q	G	I	E	G	K	A	M	S	E	E	W	A	R	Y	Y	P	R	Q	F	D	S	W	K	K	T	K	E	S	D	N	I	T	D	M	L	K	E	K	P	A	L	V	V	A	W	A	G	Y	P	F	S	K	D	Y	N	A	P	R	G	H	Y	Y	A	L	Q	D	N	I	N	T	L	R	T	G	A	P	V	D
Template Known Secondary structure		T	T			T	T	T	T	S	G	G	G	G	T	T	T										G	G	G	G						B						T						T	T	T	S	G	G	G	T			B					G	G	G								S	G	G	G				S	S
Template Predicted Secondary structure
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	D	G	P	L	P	M	A	C	W	S	C	K	S	P	D	V	A	R	L	I	Q	K	D	G	E	D	G	Y	F	H	G	K	W	A	R	G	G	P	E	I	V	N	N	L	G	C	A	D	C	H	N	T	A	S	P	E	F	A	K	G	K	P	E	L	T	L	S	R	P	Y	A	A	R	A	M	E	A	I
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.
Template Sequence		G	K	T	G	P	L	P	S	A	C	W	T	C	K	S	P	D	V	P	R	I	I	E	Q	D	G	E	L	E	Y	F	T	G	K	W	A	K	Y	G	D	E	I	V	N	T	I	G	C	Y	N	C	H	D	D	K	S	.	.	.	.	.	.	.	A	E	L	K	S	K	V	P	Y	L	D	R	G	L	S	A	A
Template Known Secondary structure		T	T		S	S	S	B	G	G	G	T	T	T	T		T															T	B	S	B	G	G	G	G	T	T	T					S						B		T	T	T	.	.	.	.	.	.	.			B														T
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.								.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		193	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.												.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure						.																													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.																													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	K	P	F	.	E	K	A	G	R	F	D	Q	Q	S	M	V	C	G	Q	C	H	V	E	Y	Y	F	D	G	K	N	K	A	.	.	.	.	.	.	.	.	.	.	.	V	K	F	P	W	D	D	G	M	K	V	E	N	M	E	Q	Y	Y	D	K	I	A	F	S	D	W	T	N	S	L	S	K	T	P	M	L
Query Conservation						.																													.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	F	K	T	F	A	E	S	T	H	Q	E	K	R	S	L	V	C	A	Q	C	H	V	E	Y	Y	F	K	K	T	E	W	K	D	D	K	G	V	D	K	T	A	M	V	V	T	L	P	W	S	K	G	I	S	T	E	Q	M	E	A	Y	Y	D	E	I	N	F	A	D	W	T	H	G	I	S	K	T	P	M	L
Template Known Secondary structure		T				T	T	T	S												T	T	S	S												T	T														T	T		S	S											T	T			S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	Q	H	P	E	Y	E	T	W	T	A	G	I	H	G	K	N	N	V	T	C	I	D	C	H	M	P	K	V	Q	N	A	E	G	K	L	Y	T	D	H	K	I	G	N	P	F	D	N	F	A	Q	T	C	A	N	C	H	T	Q	D	K	A	A	L	Q	K	V	V	A	E	R	K	Q	S	I	N	D	L	K
Query Conservation
Alig confidence																																						.
Template Conservation																																						.
Template Sequence		K	A	Q	H	P	D	W	E	L	Y	K	T	G	I	H	G	Q	K	G	V	S	C	A	D	C	H	M	P	Y	T	Q	E	G	A	V	K	.	Y	S	D	H	K	V	G	N	P	L	D	N	M	D	K	S	C	M	N	C	H	R	E	S	E	Q	K	L	K	D	I	V	K	Q	K	F	E	R	K	E	F	L	Q
Template Known Secondary structure												T	T	S						T								S						S	S			.									G	G	G	G					T	T	T	T			S
Template Predicted Secondary structure																																						.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	V	E	D	Q	L	V	H	A	H	F	E	A	K	A	A	L	D	A	G	A	T	E	A	E	M	K	P	I	Q	D	D	I	R	H	A	Q	W	R	W	D	L	A	I	A	S	H	G	I	H	M	H	A	P	E	E	G	L	R	M	L	G	T	A	M	D	K	A	A	D	A	R	T	K	L	A	R	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	A	F	D	N	I	G	K	A	H	L	E	T	G	K	A	M	E	L	G	A	T	D	A	E	L	K	E	I	R	T	H	I	R	H	A	Q	W	R	A	D	M	A	I	A	G	H	G	S	F	F	H	A	P	E	E	V	L	R	L	L	A	S	G	N	E	E	A	Q	K	A	R	I	K	L	V	K	V	L
Template Known Secondary structure																					T	T																									S	S	T	T					S
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	K	G	I	T	H	E	I	Q	I	P	D	I	S	T	K	E	K	A	Q	Q	A	I	G	L	N	M	E	Q	I	K	A	E	K	Q	D	F	I	K	T	V	I	P	Q	W	E	E	Q	A	R	K	N	G	L	L	S
Query Conservation
Alig confidence											.
Template Conservation											.
Template Sequence		A	K	Y	G	A	I	D	Y	V	.	A	P	D	F	E	T	K	E	K	A	Q	K	L	A	K	V	D	M	E	A	F	I	A	E	K	L	K	F	K	Q	T	L	E	Q	E	W	K	K	Q	A	I	A	K	G	R	L	N
Template Known Secondary structure				T	T		T	T			.						S								T	T																T													T	S
Template Predicted Secondary structure											.
Template SS confidence
		433	.	.	.	.	.	.	440	.		.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.