Job Description P60844 Confidence 100.00% Date Thu Jan 5 12:07:12 GMT 2012 Rank 5 Aligned Residues 221 % Identity 33% Template c2f2bA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:aquaporin aqpm; PDBTitle: crystal structure of integral membrane protein aquaporin aqpm at 1.68a2 resolution Resolution 1.68 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.																	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	F	R	K	L	A	A	E	C	F	G	T	F	W	L	V	F	G	G	C	G	S	A	V	L	A	A	G	F	P	E	L	G	I	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	V	A	L	A	F	G	L	T	V	L	T	M	A	F	A	V	G	H	I	S	G	G	H	F	N	P
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	K	R	C	I	A	E	F	I	G	T	F	I	L	V	F	F	G	A	G	S	A	A	V	T	L	M	I	A	S	G	G	T	S	P	N	P	F	N	I	G	I	G	L	L	G	G	L	G	D	W	V	A	I	G	L	A	F	G	F	A	I	A	A	S	I	Y	A	L	G	N	I	S	G	C	H	I	N	P
Template Known Secondary structure																																T	T				S	S	T	T			S	T	T	T	T	T	T																							T	T	T	T					S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	T	I	G	L	W	A	G	G	R	F	P	A	K	E	V	V	G	Y	V	I	A	Q	V	V	G	G	I	V	A	A	A	L	L	Y	L	I	A	S	G	K	T	G	F	D	A	A	A	S	G	F	A	S	N	G	Y	G	E	H	S	P	G	G	Y	S	M	L	S	A	L	V	V	E	L	V	L	S	A	G
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.
Template Sequence		A	V	T	I	G	L	W	S	V	K	K	F	P	G	R	E	V	V	P	Y	I	I	A	Q	L	L	G	A	A	F	G	S	F	I	F	L	Q	C	A	G	I	G	A	A	T	V	G	G	L	G	.	.	.	.	.	.	.	A	T	A	P	F	P	G	I	S	Y	W	Q	A	M	L	A	E	V	V	G	T	F	L
Template Known Secondary structure										T	T	S	S		G	G	G																									T					T	T	G	G	G	.	.	.	.	.	.	.						T	T
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.								.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.					.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.																																						.	.	.	.
Query SS confidence																		.																																						.	.	.	.
Query Sequence		F	L	L	V	I	H	G	A	T	D	K	F	A	P	A	G	.	F	A	P	I	A	I	G	L	A	L	T	L	I	H	L	I	S	I	P	V	T	N	T	S	V	N	P	A	R	S	T	A	V	A	I	F	Q	.	.	.	.	G	G	W	A	L	E	Q	L	W	F	F	W	V	V	P	I	V	G	G	I	I	G
Query Conservation																		.																																						.	.	.	.
Alig confidence																		.																																						.	.	.	.
Template Conservation
Template Sequence		L	M	I	T	I	M	G	I	A	V	D	E	R	A	P	K	G	F	A	G	I	I	I	G	L	T	V	A	G	I	I	T	T	L	G	N	I	S	G	S	S	L	N	P	A	R	T	F	G	P	Y	L	N	D	M	I	F	A	G	T	D	L	W	N	Y	Y	S	I	Y	V	I	G	P	I	V	G	A	V	L	A
Template Known Secondary structure										T	T	S	T	T	S		T	T																																														G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	I	Y	R	T	L	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	T	Y	Q	Y	L	T	S
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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