Job Description P60844 Confidence 100.00% Date Thu Jan 5 12:07:12 GMT 2012 Rank 15 Aligned Residues 218 % Identity 28% Template c2b5fD_ PDB info PDB header:transport protein,membrane protein Chain: D: PDB Molecule:aquaporin; PDBTitle: crystal structure of the spinach aquaporin sopip2;1 in an2 open conformation to 3.9 resolution Resolution 3.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		M	F	R	K	L	A	A	E	C	F	G	T	F	W	L	V	F	G	G	C	G	S	A	V	L	A	A	.	.	G	F	P	E	L	G	I	G	F	A	G	V	A	L	A	F	G	L	T	V	L	T	M	A	F	A	V	G	H	I	S	G	G	H	F	N	P	A	V	T	I	G	L	W	A	G	G	R	F	P	A
Query Conservation																													.	.
Alig confidence																													.	.
Template Conservation
Template Sequence		F	W	R	A	A	I	A	E	F	I	A	T	L	L	F	L	Y	I	T	V	A	T	V	I	G	H	S	K	E	T	V	V	C	G	S	V	G	L	L	G	I	A	W	A	F	G	G	M	I	F	V	L	V	Y	C	T	A	G	I	S	G	G	H	I	N	P	A	V	T	F	G	L	F	L	A	R	K	V	S	L
Template Known Secondary structure		G	T	T																									T		S	S	T	T		S																						T	T	T	T					S									T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	V	V	G	Y	V	I	A	Q	V	V	G	G	I	V	A	A	A	L	L	Y	L	I	A	S	G	K	T	G	F	D	A	A	A	S	G	F	A	S	N	G	Y	G	E	H	S	P	G	G	Y	S	M	L	S	A	L	V	V	E	L	V	L	S	A	G	F	L	L	V	I	H	G	A	T	D	K	F	A	P
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.
Template Sequence		L	R	A	L	V	Y	M	I	A	Q	C	L	G	A	I	C	G	V	G	L	V	K	A	F	M	K	G	P	Y	N	Q	F	G	G	G	A	.	.	.	.	.	.	.	.	N	S	V	A	L	G	Y	N	K	G	T	A	L	G	A	E	I	I	G	T	F	V	L	V	Y	T	V	F	S	A	T	D	P	K	H	V
Template Known Secondary structure																										S							S	G	G	G		.	.	.	.	.	.	.	.					T	T	S																							T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.									.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		A	G	F	A	P	I	A	I	G	L	A	L	T	L	I	H	L	I	S	I	P	V	T	N	T	S	V	N	P	A	R	S	T	A	V	A	I	F	Q	G	G	W	A	.	L	E	Q	L	W	F	F	W	V	V	P	I	V	G	G	I	I	G	G	L	I	Y	R	T	L
Query Conservation																																													.
Alig confidence																																													.
Template Conservation
Template Sequence		P	I	L	A	P	L	P	I	G	F	A	V	F	M	V	H	L	A	T	I	P	I	T	G	T	G	I	N	P	A	R	S	F	G	A	A	V	I	F	N	S	N	K	V	W	D	D	Q	W	I	F	W	V	G	P	F	I	G	A	A	V	A	A	A	Y	H	Q	Y	V
Template Known Secondary structure						S															T	T	T	T	S																								T	T
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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