Job Description P60844 Confidence 100.00% Date Thu Jan 5 12:07:12 GMT 2012 Rank 4 Aligned Residues 229 % Identity 29% Template c1ldaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycerol uptake facilitator protein; PDBTitle: crystal structure of the e. coli glycerol facilitator (glpf) without2 substrate glycerol Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	R	K	L	A	A	E	C	F	G	T	F	W	L	V	F	G	G	C	G	S	A	V	L	A	A	G	F	P	E	L	G	I	G	F	A	G	V	A	L	A	F	G	L	T	V	L	T	M	A	F	A	V	G	H	I	S	G	G	H	F	N	P	A	V	T	I	G	L	W	A	G	G	R	F	P	A	K	E
Query Conservation
Alig confidence																										.
Template Conservation																										.
Template Sequence		L	K	G	Q	C	I	A	E	F	L	G	T	G	L	L	I	F	F	G	V	G	C	V	A	.	A	L	K	V	A	G	A	S	F	G	Q	W	E	I	S	V	I	W	G	L	G	V	A	M	A	I	Y	L	T	A	G	V	S	G	A	H	L	N	P	A	V	T	I	A	L	W	L	F	A	C	F	D	K	R	K
Template Known Secondary structure																										.					S																																												S				G	G	G
Template Predicted Secondary structure																										.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.										120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.
Query Sequence		V	V	G	Y	V	I	A	Q	V	V	G	G	I	V	A	A	A	L	L	Y	L	I	A	S	G	K	T	G	F	D	A	A	A	S	G	F	A	S	N	.	.	.	.	.	.	.	.	.	G	Y	G	E	H	S	P	G	G	Y	S	M	L	S	A	L	V	V	E	L	V	L	S	A	G	F	L	L	V	I	H	G
Query Conservation																																									.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	I	P	F	I	V	S	Q	V	A	G	A	F	C	A	A	A	L	V	Y	G	L	Y	Y	N	L	F	F	D	F	E	Q	T	H	H	I	V	R	G	S	V	E	S	V	D	L	A	G	T	F	S	T	Y	P	N	P	H	I	N	F	V	Q	A	F	A	V	E	M	V	I	T	A	I	L	M	G	L	I	L	A
Template Known Secondary structure																								T											T	T			T	T	S	G	G	G					T	T	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		152	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.												.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	D	K	F	A	P	A	G	.	.	.	F	A	P	I	A	I	G	L	A	L	T	L	I	H	L	I	S	I	P	V	T	N	T	S	V	N	P	A	R	S	T	A	V	A	I	F	Q	.	.	.	.	.	.	.	.	.	.	.	G	G	W	A	L	E	Q	L	W	F	F	W	V	V	P	I	V	G	G	I
Query Conservation											.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	D	D	G	N	G	V	P	R	G	P	L	A	P	L	L	I	G	L	L	I	A	V	I	G	A	S	M	G	P	L	T	G	F	A	M	N	P	A	R	D	F	G	P	K	V	F	A	W	L	A	G	W	G	N	V	A	F	T	G	G	R	D	I	P	Y	F	L	V	P	L	F	G	P	I	V	G	A	I
Template Known Secondary structure					T	T	S	S	S			G	G	G																T																							T	T	T	T	T						S	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	G	L	I	Y	R	T	L	L	E	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	A	F	A	Y	R	K	L	I	G	R	H
Template Known Secondary structure											T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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