Job Description P33595 Confidence 100.00% Date Thu Jan 5 11:52:20 GMT 2012 Rank 6 Aligned Residues 427 % Identity 19% Template d1uqwa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.72

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		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		H	I	L	R	V	L	Y	Y	R	P	L	R	N	L	L	P	G	S	A	L	R	R	S	E	T	H	I	A	R	Q	I	F	S	S	L	T	R	I	N	E	E	N	G	E	L	E	A	D	I	A	H	H	W	Q	.	Q	I	S	P	L	H	W	R	F	F	L	R	P	G	V	H	F	H	H	G	R	E	L	E	M
Query Conservation																																																								.
Alig confidence																																											.													.
Template Conservation																																											.
Template Sequence		K	D	V	V	V	A	V	G	S	N	F	T	T	L	D	P	Y	D	A	N	D	T	L	S	Q	A	V	A	K	S	F	Y	Q	G	L	F	G	L	D	K	E	.	X	K	L	K	N	V	L	A	E	S	Y	T	V	S	D	D	G	I	T	Y	T	V	K	L	R	E	G	I	K	F	Q	D	G	T	D	F	N	A
Template Known Secondary structure									S	S					S		G	G	G			S								T	T	T				S					T	T	.	S					S	S								T	T	S	S								T	T		B		T	T	S		B
Template Predicted Secondary structure																																											.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.								.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.																																														.	.
Query SS confidence																.	.	.	.	.	.	.																																														.	.
Query Sequence		D	D	V	I	A	S	L	K	R	I	N	T	L	P	.	.	.	.	.	.	.	L	Y	S	H	I	A	D	I	V	S	P	T	P	W	T	L	D	I	H	L	T	Q	P	D	R	W	L	P	L	L	L	G	Q	V	P	A	M	I	L	P	R	E	W	E	T	.	.	L	S	N	F	A	S	H	P	I	G	T	G
Query Conservation																.	.	.	.	.	.	.																																														.	.
Alig confidence																.	.	.	.	.	.	.																																														.	.
Template Conservation
Template Sequence		A	A	V	K	A	N	L	D	R	A	S	D	P	A	N	H	L	K	R	H	N	L	Y	K	N	I	A	K	T	E	A	I	D	P	T	T	V	K	I	T	L	K	Q	P	F	S	A	F	I	N	I	L	A	H	P	A	T	A	X	I	S	P	A	A	L	E	K	Y	G	K	E	I	G	F	Y	P	V	G	T	G
Template Known Secondary structure												T		G	G	G			T	T	G	G	G	T	T	T									T	T							S	S			T	T						T	S	T	T													G	G	G	T	T	T	S				S	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320															.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure													.											.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.											.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	Y	A	V	I	R	N	S	T	N	Q	.	L	K	I	Q	A	F	D	D	F	F	.	G	Y	R	A	L	I	D	E	V	N	V	W	V	L	P	E	I	A	D	E	P	A	G	G	L	M	L	K	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	E	E	K	E	I	E	S	R	L	E	E
Query Conservation													.											.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.											.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	Y	E	L	D	T	W	N	Q	T	D	F	V	K	V	K	K	F	A	G	Y	W	Q	P	G	L	P	K	L	D	S	I	T	W	R	P	V	A	D	N	N	T	R	A	A	X	L	Q	T	G	E	A	Q	F	A	F	P	I	P	Y	E	Q	A	T	L	L	E	K	N	K	N	I	E	L	X	A	S	P	S	I
Template Known Secondary structure		S								T	T	T								T	T		S	S	T	T					S																				T	S		S				S													T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	C	Y	Y	L	L	F	D	S	R	T	H	R	G	A	N	Q	Q	V	R	D	W	V	S	Y	V	L	S	P	T	N	L	V	Y	F	A	E	E	Q	Y	Q	Q	L	W	F	P	A	Y	G	L	L	P	R	W	H	H	A	R	T	I	K	S	E	K	P	A	G	L	E	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	Q	R	Y	I	S	X	N	V	T	Q	K	P	F	D	N	P	K	V	R	E	A	L	N	Y	A	I	N	R	P	A	L	V	K	V	A	F	A	G	Y	A	T	P	A	T	G	V	V	P	P	S	I	A	Y	A	Q	S	Y	K	P	W	P	Y	D	P	V	K	A	R	E	L	L	K	E	A	G	Y	P	N	G
Template Known Secondary structure										T	T	S	T	G	G	G	S																						T	T						S	S	S	S		T	T	S	B	T																						T		T	T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
			403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.								.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure		.																																														.	.	.	.	.	.	.
Query SS confidence		.																																														.	.	.	.	.	.	.
Query Sequence		.	S	L	T	L	T	F	Y	Q	D	H	S	E	H	R	V	I	A	G	I	M	Q	Q	I	L	A	S	H	Q	V	T	L	K	I	K	E	I	D	Y	D	Q	W	H	T	G	E	.	.	.	.	.	.	.	I	E	S	D	I	W	L	N	S	A	N	F	T	L	P	L	D	F	S	V	F	A	H	L	C	E	V
Query Conservation		.																																														.	.	.	.	.	.	.
Alig confidence		.																																														.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	S	T	T	L	W	S	S	H	N	H	S	T	A	Q	K	V	L	Q	F	T	Q	Q	Q	L	A	Q	V	G	I	K	A	Q	V	T	A	X	D	A	G	Q	R	A	A	E	V	E	G	K	G	Q	K	E	S	G	V	R	X	F	Y	T	G	W	S	A	S	T	G	E	A	D	W	A	L	S	P	L	F	A	S
Template Known Secondary structure												S	S	S															T	T																	T	T	S			T	T	T													T	T	S	B											G
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		475	.	.													.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500		.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.																								.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.																								.
Query Sequence		P	L	L	.	.	.	.	.	.	.	.	.	.	.	.	Q	H	C	I	P	I	D	W	Q	A	D	A	A	R	W	R	N	G	E	M	N	L	A	.	N	W	C	Q	Q	L	V	A	S	K	A	M	V	P	L	L	H	H	W	L	I	I	Q	G	Q	R	S	M	R	G	L	R	M	N	T	L	G	W	F	D	F
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.																								.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation
Template Sequence		Q	N	W	P	P	T	L	F	N	T	A	F	Y	S	N	K	Q	V	D	D	F	L	A	Q	A	L	K	T	N	D	P	A	E	K	T	R	L	Y	K	A	A	Q	D	I	I	W	Q	E	S	P	W	I	P	L	V	V	E	K	L	V	S	A	H	S	K	N	L	T	G	F	W	I	X	P	D	T	G	F	S	F
Template Known Secondary structure		G	G	T	T	T	T	S			T	T																T																																						T	T			S					T	T	S
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
		542	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	A	W	F	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	A	D	L	Q
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		484	.	.	.	.	.