Return to main results Retrieve Phyre Job Id

Job DescriptionP33595
Confidence94.23%DateThu Jan 5 11:52:20 GMT 2012
Rank104Aligned Residues65
% Identity14%Templated1ku9a_
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain DNA-binding protein Mj223
Resolution2.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10........ .20.........30.........40.........50.........60........
Predicted Secondary structure 

.............

















Query SS confidence 














. . . . . . . . . . . . .

















































Query Sequence  ARLQQQFIRLWQCCE. . . . . . . . . . . . . GKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLT
Query Conservation   
    
  
     .............       
 


  
 

 

    
      


 
 
  


  
 
 
Alig confidence 














.............

















































Template Conservation      
         

      

  
       
  


  
 



 

  
  

  


 
     


     
Template Sequence  KLIIELFSELAKIHGLNKSVGAVYAILYLSDKPLTISDIXEELKISKGNVSXSLKKLEELGFVRKVWIKGERKNYYEA
Template Known Secondary structure  TT


SS
T

TTS

TT
SS
Template Predicted Secondary structure 



















Template SS confidence 













































































   910.........20.........30.........40.........50.........60.........70.........80......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions