Job Description P33595 Confidence 100.00% Date Thu Jan 5 11:52:20 GMT 2012 Rank 10 Aligned Residues 422 % Identity 18% Template c3t66A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nickel abc transporter (nickel-binding protein); PDBTitle: crystal structure of nickel abc transporter from bacillus halodurans Resolution 2.80 Å

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		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	I	L	R	V	L	Y	Y	R	P	L	R	N	L	L	P	G	S	A	L	R	R	S	E	T	H	I	A	R	Q	I	F	S	S	L	T	R	I	N	E	E	N	G	E	L	E	A	D	I	A	H	H	W	Q	Q	I	S	P	L	H	W	R	F	F	L	R	P	G	V	H	F	H	H	G	R	E	L	E	M
Query Conservation
Alig confidence																			.	.
Template Conservation																			.	.
Template Sequence		E	K	H	I	H	F	L	F	N	V	S	T	N	S	L	D	P	.	.	H	V	D	M	T	Y	I	P	V	R	A	G	I	T	E	T	L	V	R	V	D	E	E	N	V	T	I	A	P	W	L	A	E	S	W	D	S	T	D	G	Q	H	W	T	I	K	L	R	E	D	V	T	F	Q	N	G	K	E	M	D	A
Template Known Secondary structure										S				S				T	.	.	T	T		S	S						T	T	S		B		S					T	T	T		S				S	S							S	S	S	S								S	S		B		T	T	S		B
Template Predicted Secondary structure																			.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.					.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		D	D	V	I	A	S	L	K	R	I	N	T	L	P	.	.	.	.	L	Y	S	H	I	A	D	I	V	S	P	T	P	W	T	L	D	I	H	L	T	Q	P	D	R	W	L	P	L	L	L	G	Q	V	P	A	M	I	L	P	R	E	W	E	T	L	S	N	F	A	S	H	P	I	G	T	G	P	Y	A	V	I
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.											.																																.	.	.
Template Conservation																														.																																.	.	.
Template Sequence		E	A	V	K	A	S	L	E	R	A	L	D	E	S	V	A	I	E	N	A	L	K	I	D	E	I	E	A	.	D	G	Y	T	L	H	I	T	T	K	E	P	F	P	E	F	I	S	E	L	V	N	P	N	V	S	I	I	D	V	T	.	.	.	E	E	D	F	T	N	H	P	V	G	T	G	P	F	A	L	E
Template Known Secondary structure													T	T																.		T	T							S	S			T	T	T	G	G	G	G	G	S	G	G	G		B	B		T	T	.	.	.	S			T	T	T				B	S	S	S
Template Predicted Secondary structure																														.																																.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		275	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320															.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	N	S	T	N	Q	.	L	K	I	Q	A	F	D	D	F	F	G	Y	R	A	L	I	D	E	V	N	V	W	V	L	P	E	I	A	D	E	P	A	G	G	L	M	L	K	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	E	E	K	E	I	E	S	R	L	E	E	G	C	Y	Y	L	L
Query Conservation								.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	F	T	P	G	S	K	L	E	L	V	R	Y	D	E	Y	W	D	G	A	S	K	L	D	S	V	T	F	S	F	N	E	D	A	S	A	R	S	L	A	L	E	S	G	Q	A	D	I	V	Y	R	P	E	V	E	S	I	E	T	L	Q	A	N	E	G	I	M	V	E	A	T	E	T	F	R	T	H	N	L	T
Template Known Secondary structure					T	T	T								T	T		T	T				S		S																			T	T	S		S				S			T	T	T							S	T	T									S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	D	S	R	T	H	R	G	A	N	Q	Q	V	R	D	W	V	S	Y	V	L	S	P	T	N	L	V	Y	F	A	E	E	Q	Y	Q	Q	L	W	F	P	A	Y	G	L	L	P	R	W	H	H	A	R	T	I	K	S	E	K	P	A	G	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	N	L	D	R	D	S	L	K	D	V	N	V	R	R	A	V	D	V	L	L	D	R	Q	E	I	V	D	T	I	M	L	G	Y	A	E	V	A	D	G	P	F	I	P	T	L	P	F	A	P	S	Y	E	K	K	E	T	G	T	D	I	A	I	Q	Y	L	E	E	A	G	Y	T	L	E	N	Q	M	Q	K	D
Template Known Secondary structure				T	T	S	T	G	G	G	S											S									T	T	T	T	S					S	S	S	S		T	T	S	T	T										S												T										T
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
						403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450			.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																																	.	.
Query SS confidence		.	.	.	.																																																	.	.
Query Sequence		.	.	.	.	S	L	T	L	T	F	Y	Q	D	H	S	E	H	R	V	I	A	G	I	M	Q	Q	I	L	A	S	H	Q	V	T	L	K	I	K	E	I	D	Y	D	Q	W	H	T	G	E	I	E	S	.	.	D	I	W	L	N	S	A	N	F	T	L	P	L	D	F	S	V	F	A	H	L	C	E	V	P	L
Query Conservation		.	.	.	.																																																	.	.
Alig confidence		.	.	.	.																																																	.	.
Template Conservation
Template Sequence		G	E	P	L	H	F	T	V	L	T	Y	G	S	R	A	E	L	P	L	I	A	Q	V	F	Q	S	N	A	K	Q	I	G	I	E	V	E	I	R	Q	I	E	V	P	E	E	Y	M	A	S	N	R	D	W	D	L	I	T	Y	S	N	V	T	S	P	R	G	D	A	G	Y	Y	L	N	A	T	Y	H	P	T	G
Template Known Secondary structure		T											S	S	S	T	T															T	T									S	S	S	T					T		T	T										S		T	T	S											S	T	T
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
										477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500		.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.		.	.	530	.	.	.	.	.	.	.	.	.	540	.	.		.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																									.																												.																.
Query SS confidence		.	.	.	.	.	.	.	.																									.																												.																.
Query Sequence		.	.	.	.	.	.	.	.	L	Q	H	C	I	P	I	D	W	Q	A	D	A	A	R	W	R	N	G	E	M	N	L	A	.	N	W	C	Q	Q	L	V	A	S	K	A	M	V	P	L	L	H	H	W	L	I	I	Q	G	Q	R	S	.	M	R	G	L	R	M	N	T	L	G	W	F	D	F	K	.	S	A	W
Query Conservation		.	.	.	.	.	.	.	.																									.																												.																.
Alig confidence		.	.	.	.	.	.	.	.																									.																												.																.
Template Conservation
Template Sequence		A	L	N	F	S	S	V	N	D	P	E	L	T	G	I	I	D	E	L	N	R	T	V	D	Q	D	V	R	A	K	L	T	E	Q	A	A	A	Y	I	D	E	Q	K	I	H	S	F	L	I	H	P	S	A	V	V	A	Y	D	E	N	K	V	K	N	W	V	T	T	R	S	E	Y	Y	M	I	T	N	Q	L	D
Template Known Secondary structure		T	T			S																T																					T	T																T	T	T		B						S	S	S				S		T	T		B
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
		546
Predicted Secondary structure
Query SS confidence
Query Sequence		F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		487