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Job DescriptionP33595
Confidence100.00%DateThu Jan 5 11:52:20 GMT 2012
Rank12Aligned Residues415
% Identity16%Templatec3ry3B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:putative solute-binding protein; PDBTitle: putative solute-binding protein from yersinia pestis.
Resolution2.43 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   121........130 .........140.........150.........160.........170... ......180.........190........
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Query Sequence  ILRVLYYRPL. RNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQ. QISPLHWRFFLRPGVHFHHGRELEM
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Template Sequence  TLQLAIGDEPTEGFDPXLGWSHGSYLL. . . LHSPLLKQNED. FSWDSLLLSQYQPSDDGKTWLLTLKPDLKFSDGSPLTA
Template Known Secondary structure 

S


SS


GGG
SSSST...


S
TT.S
SS
TTSS
TT
B
TTS
B

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   30.........40.........50...... ...60....... ..70.........80.........90.........100.....
 
   199200.........210.. .......220.........230.........240.........250.........260.........270.......
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Query Sequence  DDVIASLKRINTLP. LYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNS
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Template Sequence  KDVAFTYNNAAAGKVDXGNFLSAEVIDPLNVRIHLKAPQSTFVNVLGSLG. . IVSADKYNAKTYAQKPIGAGPYRLVSFQ
Template Known Secondary structure  T


S

SSTTSS

TTTTS
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STT

TTTTTTS


SSS
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   106...110.........120.........130.........140.........150..... ....160.........170.........180...
 
   278.280 .........290.........300.........310.........320..... ....330..
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Query Sequence  TNQ. LKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEK. . . . . . . . . . . . . . . . . . . . . . . . EIESRLE
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Template Sequence  PGQQXIVEANPYYAGNKNDFDKLIFVFLDE. DSAFAAAQSGQLGVVRIPPSXAVGSVNNXKLWVRPSVENRGIVFPTTPA
Template Known Secondary structure  TTT
TT
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S
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.TT

S
TTS




TT
B




S
S
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   186...190.........200.........210..... ....220.........230.........240.........250.........260....
 
   333......340.........350.........360.........370.........380.........390.........400..
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Query Sequence  EGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLE. . . . . . . . . .
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Template Sequence  GKKDAHGYPIGNDVTADVAIRRAINYAINRQLLADQIXEGHAIPAYTGVQGLPWNNPDSAIKDGDIDKAKQILEQAGWQL
Template Known Secondary structure 

TTS


TTTTS

STT

SSTTTTSTTS
TT




S
TT
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   265....270.........280.........290.........300.........310.........320.........330.........340....
 
   403......410.........420.........430.........440.........450.........460.........
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Query Sequence  . . . . . . . . . . . . . SLTLTFYQDHSEHRVIAGIMQQILASHQVTLKIKEIDYDQWHTGEIESDIWLNSANFTLPLDFSVFA
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Template Sequence  NSQGTREKNGLPAKITLWYTSGDTTRRDLAQALRSXLKPIGIDVDLKSGSWETVERN. XHANPTLFGW. . GSLDPXELYH
Template Known Secondary structure 
TTSSTT
SS
GGGT

.TTTS


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   345....350.........360.........370.........380.........390.........400. ........410. ........420.
 
   470. ........480.........490.........500.... .....510.........520.........530.
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Query Sequence  HL. . . . . . . . . . . CEVPLLQHCIPIDWQADAARWRNGEMNLANWCQ. . . . . . . QLVASKAMVPLLHHWLIIQGQRSMRGL
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Template Sequence  HYSSNAAGVEYYNPGYYKNPXVDKHLQQALDAPTWQQAVPFWQQVDWDGTTGAGIRGDAAWAWLLNIQHTYLANNCVDLG
Template Known Secondary structure 
GGGTTSTTSSTT




SSTTT

SS

SSTTTT


TT



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   422.......430.........440.........450.........460.........470.........480.........490.........500.
 
   532.... ...540.... .
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Query Sequence  RMNTL. . . GWFDFKSA. . W
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Template Sequence  KGTPEIHGSWSLLNSIDSW
Template Known Secondary structure 

S
B
SSTTGGGGGGGG
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   502.......510.........520
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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