Job Description P33595 Confidence 100.00% Date Thu Jan 5 11:52:20 GMT 2012 Rank 11 Aligned Residues 420 % Identity 13% Template c3rqtA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: 1.5 angstrom crystal structure of the complex of ligand binding2 component of abc-type import system from staphylococcus aureus with3 nickel and two histidines Resolution 1.50 Å

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		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	R	V	L	Y	Y	R	P	L	R	N	L	L	P	G	S	A	L	R	R	S	E	T	H	I	A	R	Q	I	F	S	S	L	T	R	I	N	E	E	N	G	E	L	E	A	D	I	A	H	H	W	Q	Q	I	S	P	L	H	W	R	F	F	L	R	P	G	V	H	F	H	H	G	R	E	L	E	M	D	D
Query Conservation
Alig confidence																				.	.	.	.																			.
Template Conservation																				.	.	.	.																			.
Template Sequence		D	L	N	I	S	L	P	L	K	T	K	S	I	A	P	Y	E	T	.	.	.	.	D	V	P	V	K	I	G	A	A	E	S	L	F	K	T	N	D	Q	.	G	K	I	E	K	A	L	V	K	S	Y	H	Q	P	N	D	T	T	L	D	I	E	L	K	D	N	I	K	F	Q	N	G	Q	K	L	T	A	E	K
Template Known Secondary structure								S	S			S				T	T	T		.	.	.	.	S					T	T	S		B		S					T	T	.	S					S	S									T	T								S	S		B		T	T	S		B
Template Predicted Secondary structure																				.	.	.	.																			.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.					.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		201	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		V	I	A	S	L	K	R	I	N	T	L	P	.	.	.	L	Y	S	H	I	A	D	I	V	S	P	T	P	W	T	L	D	I	H	L	T	Q	P	D	R	W	L	P	L	L	L	G	Q	V	P	A	M	I	L	P	R	E	W	E	T	L	S	N	F	A	S	H	P	I	G	T	G	P	Y	A	V	I	R	N	S
Query Conservation														.	.	.
Alig confidence														.	.	.																																										.	.
Template Conservation																																																										.	.
Template Sequence		V	K	S	S	L	E	N	S	X	K	K	S	D	L	V	K	Y	S	L	P	I	S	S	I	T	A	K	G	Q	K	L	T	I	K	T	N	S	A	Y	P	E	L	V	S	E	L	A	N	P	F	X	A	I	Y	D	T	.	.	D	A	K	S	D	V	N	Q	T	P	V	G	T	G	P	Y	Q	I	K	D	Y	K
Template Known Secondary structure																													T	T							S	S			T	T					T	T	S	G	G	G		B			T	.	.	T		S	S		T	T	T	S				S	S	S
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		278	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320															.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure					.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	N	Q	.	L	K	I	Q	A	F	D	D	F	F	G	Y	R	A	L	I	D	E	V	N	V	W	V	L	P	E	I	A	D	E	P	A	G	G	L	M	L	K	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	E	E	K	E	I	E	S	R	L	E	E	G	C	Y	Y	L	L	F	D	S
Query Conservation					.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	S	R	K	I	S	L	S	N	F	K	D	Y	W	Q	G	K	P	K	L	D	H	I	T	V	T	Y	Q	E	D	G	N	N	R	V	R	N	L	E	S	Q	K	D	D	L	I	T	D	V	P	V	N	K	V	Q	D	I	E	N	N	Q	N	L	K	V	S	K	E	S	G	F	R	T	S	L	L	X	Y	N	H
Template Known Secondary structure		T	T	T								T	T		T	T	S			S		S																			T	T	S		S				S			G	G	G								T	T																		T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.															.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	T	H	R	G	A	N	Q	Q	V	R	D	W	V	S	Y	V	L	S	P	T	N	L	V	Y	F	A	E	E	Q	Y	Q	Q	L	W	F	P	A	Y	G	L	L	P	R	W	H	H	A	R	T	I	K	S	E	K	P	A	G	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	T	L	T	F
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.
Template Sequence		T	N	.	K	K	X	T	K	S	V	R	E	A	L	D	H	I	I	D	R	Q	G	I	A	D	H	I	Y	Q	G	Y	A	K	P	A	T	S	P	F	N	D	K	I	P	Y	I	K	E	P	K	L	T	K	Q	N	I	E	Q	A	K	X	L	L	A	K	D	G	Y	T	K	E	H	P	L	K	I	K	L	I	T
Template Known Secondary structure		T	S	.	T	T																						T	S	T	T	S					S	S	S	S		T	T	S	T	T																				T	T	T			S	S	S
Template Predicted Secondary structure				.
Template SS confidence
		240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450				.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.																													.	.	.	.	.	.	.
Query SS confidence																																												.	.	.																													.	.	.	.	.	.	.
Query Sequence		Y	Q	D	H	S	E	H	R	V	I	A	G	I	M	Q	Q	I	L	A	S	H	Q	V	T	L	K	I	K	E	I	D	Y	D	Q	W	H	T	G	E	I	E	S	.	.	.	D	I	W	L	N	S	A	N	F	T	L	P	L	D	F	S	V	F	A	H	L	C	E	V	P	L	L	Q	.	.	.	.	.	.	.
Query Conservation																																												.	.	.																													.	.	.	.	.	.	.
Alig confidence																																												.	.	.																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	D	G	R	P	E	L	S	K	I	A	Q	V	L	Q	S	D	A	K	K	A	N	I	E	I	D	I	K	S	V	D	D	I	E	G	Y	L	K	D	R	S	A	W	D	A	T	X	Y	S	F	G	T	I	P	R	G	D	T	G	Y	F	F	N	Q	A	Y	K	K	D	G	A	I	N	K	G	D	Y	N	N	S
Template Known Secondary structure			S	S	S	T															T	T	T									S						T	T		T	T	S		S								S		T	T	S		T								T	S	T	T		T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500		.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.			.	.	540	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.																																						.	.
Query SS confidence																								.																																						.	.
Query Sequence		H	C	I	P	I	D	W	Q	A	D	A	A	R	W	R	N	G	E	M	N	L	A	.	N	W	C	Q	Q	L	V	A	S	K	A	M	V	P	L	L	H	H	W	L	I	I	Q	G	Q	R	S	M	R	G	L	R	M	N	T	L	G	.	.	W	F	D	F	K	S	A	W	F	A	P	P
Query Conservation																								.																																						.	.
Alig confidence																								.																																						.	.							.
Template Conservation																																																																						.
Template Sequence		N	V	D	D	L	I	N	Q	L	N	H	T	V	D	V	K	E	R	H	N	I	S	N	D	I	I	K	L	S	S	R	D	V	P	N	S	Y	I	A	Y	N	D	Q	I	V	A	A	N	S	K	V	K	N	Y	K	V	T	P	E	G	I	Y	L	I	D	Y	R	T	.	T	I	E	H	H
Template Known Secondary structure												T																							S															T	T								T	T	S						T	T		.
Template Predicted Secondary structure																																																																						.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.		.	.	.	470	.