Job Description P33595 Confidence 99.73% Date Thu Jan 5 11:52:20 GMT 2012 Rank 21 Aligned Residues 183 % Identity 16% Template c3o6pA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:peptide abc transporter, peptide-binding protein; PDBTitle: crystal structure of peptide abc transporter, peptide-binding protein Resolution 1.65 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		334	.	.	.	.	.	340	.	.	.	.			.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure													.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	C	Y	Y	L	L	F	D	S	R	T	.	.	H	R	G	A	N	Q	Q	V	R	D	W	V	S	Y	V	L	S	P	T	N	L	V	Y	F	A	E	E	Q	Y	Q	Q	L	W	F	P	A	Y	G	L	L	P	R	W	H	H	A	R	T	I	K	S	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																																.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.
Template Sequence		S	T	Q	Y	X	E	L	N	Q	R	D	E	K	S	P	F	R	N	A	N	L	R	K	A	I	S	Y	S	I	D	R	K	A	L	V	E	S	I	L	G	D	G	S	I	.	.	.	E	P	N	G	L	V	P	A	D	X	A	K	D	P	S	G	G	K	D	F	A	K	E	A	G	S	Q	I	E	Y	D	T	K
Template Known Secondary structure												S	T	T		G	G	G											T									T	T	T		S	S		B	.	.	.			S	S	S	S		T	T	S		B		S	S	S	S		B
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.				.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
														398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.			430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.			.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																	.	.																		.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																																	.	.																		.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	P	A	G	L	E	S	L	T	L	T	F	Y	Q	D	H	S	E	H	R	V	I	A	G	I	M	Q	Q	I	L	A	S	H	.	.	Q	V	T	L	K	I	K	E	I	D	Y	D	Q	W	H	T	G	.	.	E	I	E	S	D	I	W	L	N	S	A	N	F	T	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																	.	.																		.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																	.	.																		.	.
Template Conservation
Template Sequence		K	A	K	E	Y	W	E	K	A	K	K	E	L	G	I	S	T	L	T	X	D	I	L	S	S	D	A	D	S	S	K	K	T	V	E	F	V	Q	G	S	I	Q	D	A	L	D	G	V	K	V	T	V	S	P	V	P	F	S	V	R	L	D	R	S	N	K	G	D	F	D	A	V	I	G	G	W	S	A	D	Y
Template Known Secondary structure															T		S											S																		S	T	T																				T			S									S	S
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.								.	480	.	.	.	.	.	.	.	.	.			490	.	.	.	.	.	.	.	.	.	500		.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.												.	.												.
Query SS confidence																			.	.	.	.	.	.	.												.	.												.
Query Sequence		P	L	D	F	S	V	F	A	H	L	C	E	V	P	L	L	Q	.	.	.	.	.	.	.	H	C	I	P	I	D	W	Q	A	D	A	.	.	A	R	W	R	N	G	E	M	N	L	A	.	N	W	C	Q	Q	L	V	A	S	K	A	M	V	P	L	L	H	H	W
Query Conservation																			.	.	.	.	.	.	.												.	.												.
Alig confidence																			.	.	.	.	.	.	.												.	.												.
Template Conservation
Template Sequence		A	D	P	S	S	F	L	D	L	F	A	S	D	N	S	Y	N	R	G	R	Y	N	N	A	E	F	D	K	F	V	K	A	A	S	S	A	D	A	T	D	P	E	K	R	W	D	D	X	L	N	A	E	K	T	I	X	G	D	X	G	V	V	P	L	F	Q	K	S
Template Known Secondary structure		S		T					G	G	G	S	T	T		T	T		T	T																S	T	T																					T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions