Return to main results Retrieve Phyre Job Id

Job DescriptionP33595
Confidence100.00%DateThu Jan 5 11:52:20 GMT 2012
Rank16Aligned Residues424
% Identity13%Templatec3ftoA_
PDB info PDB header:peptide binding proteinChain: A: PDB Molecule:oligopeptide-binding protein oppa; PDBTitle: crystal structure of oppa in a open conformation
Resolution2.38 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   121........130.........140........ .150.........160.........170... ......180.........190....
Predicted Secondary structure 













.....









.











Query SS confidence 



























. . . . .
























.




















Query Sequence  ILRVLYYRPLRNLLPGSALRRSETHIAR. . . . . QIFSSLTRINEENGELEADIAHHWQ. QISPLHWRFFLRPGVHFHHGR
Query Conservation   


   
    


       
  
  ..... 

  
   
   
 
 
 

  
 .  
   


 

 

 



 
Alig confidence 



























.....











.











.




















Template Conservation 

 

                                 
   
  .    
 

  
  
 
  
 

 

 

 



 
Template Sequence  NLKVAYQSDSPXKAQWLSGLSNDATFATXSGPGGGQDGLFFTDSG. FKFIKGGAADVALDKESKTATITLRKDLKWSDGS
Template Known Secondary structure 
SS





STTT


TGGGTTTTB


TT.SBS
SSTTTT
TT
B
TTS
Template Predicted Secondary structure 

























.















Template SS confidence 















































































   34.....40.........50.........60.........70........ .80.........90.........100.........110..
 
   195....200.........210.. .......220.........230.........240.........
Predicted Secondary structure 




.........................

















Query SS confidence 

















. . . . . . . . . . . . . . . . . . . . . . . . .




































Query Sequence  ELEMDDVIASLKRINTLP. . . . . . . . . . . . . . . . . . . . . . . . . LYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAM
Query Conservation 



 

  

 

    .........................    
  
 
 
  

 
 
  
   
   

     
Alig confidence 

















.........................




































Template Conservation 



 

  
  
                 
 
           
  
  

     

 
 
    
            
Template Sequence  EVTAKDYEFTYETIANPAYGSDRWTDSLANIVGLSDYHTGKAKTISGITFPDGENGKVIKVQFKEXKPGXTQSGNGYFLE
Template Known Secondary structure  B


GGG

S


GGGGGBTTTTS
SS
TT
TT
TTSSBSS

GGGGBTT
SSS

Template Predicted Secondary structure 













































Template SS confidence 















































































   113......120.........130.........140.........150.........160.........170.........180.........190..
 
   250..... ....260.........270.........280 .........290.........300.........310........
Predicted Secondary structure 


..........














.
















Query SS confidence 





. . . . . . . . . .
























.





































Query Sequence  ILPREW. . . . . . . . . . ETLSNFASHPIGTGPYAVIRNSTNQ. LKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLK
Query Conservation 
 
   ..........         






 
       .  
  
  
   

 

 
 
                 
Alig confidence 





..........
























.

























.










Template Conservation                            





 
        
 
 

  
    
  
 
       .     

  
 
Template Sequence  TVAPYQYLKDVAPKDLASSPKTTTKPLVTGPFKPENVVAGESIKYVPNPYYWGEKPKLNSITYEVVST. AKSVAALSSSK
Template Known Secondary structure  B


TTS
GGGTTTSGGGTTS



SSTTT
TT
SS


S
S
.TT
Template Predicted Secondary structure 




































.


Template SS confidence 















































































   193......200.........210.........220.........230.........240.........250.........260 .........270.
 
   319320. ........330.........340.. .......350.........360.........370.
Predicted Secondary structure 


..............









.............








Query SS confidence 


. . . . . . . . . . . . . .




















. . . . . . . . . . . . .




























Query Sequence  GPQ. . . . . . . . . . . . . . GEEKEIESRLEEGCYYLLFDS. . . . . . . . . . . . . RTHRGANQQVRDWVSYVLSPTNLVYFAEE
Query Conservation     ..............            
  

  
 .............      
   
 

   


  
      
Alig confidence 


..............




















.............


























..
Template Conservation 

                                  
            
       
  




  



  
    ..
Template Sequence  YDIINGXVSSQYKQVKNLKGYKVLGQQAXYISLXYYNLGHYDAKNSINVQDRKTPLQDQNVRQAIGYARNVAEVDNKF. .
Template Known Secondary structure 
S


GGGT
TT
S


TTTT




GGGS

..
Template Predicted Secondary structure 





























..
Template SS confidence 















































































   272.......280.........290.........300.........310.........320.........330.........340.........
 
   372.......380.........390.........400 .........410.........420.
Predicted Secondary structure 



























..............................



Query SS confidence 




























. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .




















Query Sequence  QYQQLWFPAYGLLPRWHHARTIKSEKPAG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LESLTLTFYQDHSEHRVIAGI
Query Conservation         

    
               ..............................   
 
            
  
Alig confidence  .



























..............................




















Template Conservation  .  
         
                 
   
  

  

             
  
 
              
  
Template Sequence  . SNGLSTPANSLIPPIFKQFTSSSVKGYEKQDLDKANKLLDEDGWKLNKSTGYREKDGKELSLVYAARVGDANAETIAQN
Template Known Secondary structure  .TTTS
SSSS
TTSTTS

TT


SSS

TTT

SSSSSTT

BS
STT
Template Predicted Secondary structure  .











































Template SS confidence 















































































   350.........360.........370.........380.........390.........400.........410.........420........
 
   422.......430.........440....... ..450.........460.........470....... ..480.......
Predicted Secondary structure 




.........













.....
Query SS confidence 

























. . . . . . . . .





























. . . . .









Query Sequence  MQQILASHQVTLKIKEIDYDQWHTGE. . . . . . . . . IESDIWLNSANFTLPLDFSVFAHLCEVPLL. . . . . QHCIPIDWQA
Query Conservation 
   
   

 
 
            .........   
  
                
      .....          
Alig confidence 

























.........





























.....









Template Conservation 
   
   

 
 
                        

    
                  
         
 
    
Template Sequence  YIQQWKKIGVKVSLYNGKLXEFNSWVDHXTTPPGANDWDITDGSWSLASEPSQQDLFSAAAPYNFGHFNDSEITKDLNDI
Template Known Secondary structure  TT
GGGS
B
STT

SS
S

SS


STT
TT
TT



Template Predicted Secondary structure 
































Template SS confidence 















































































   429430.........440.........450.........460.........470.........480.........490.........500........
 
   488. 490.........500 .........510.........520.........530.........540.........
Predicted Secondary structure  ..


.




















Query SS confidence 

. .










.
















































Query Sequence  DA. . ARWRNGEMNLA. NWCQQLVASKAMVPLLHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPP
Query Conservation    ..         
 .     
      


            
 

  
  

 

  


 
 
Alig confidence 

..










.
















































Template Conservation        
   
          
      


            
 
    
        
 
   
Template Sequence  DSAKSENPTYRKAAFVKYQEDXNKKAYVIPTNFXLNYTPVNKRVVGXTLDYGAXNTWSEIGVSSA
Template Known Secondary structure  TSGGGGS
STTS
B

TT
S

S
S
Template Predicted Secondary structure 





















Template SS confidence 
































































   509510.........520.........530.........540.........550.........560.........570...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions