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Job DescriptionP33595
Confidence100.00%DateThu Jan 5 11:52:20 GMT 2012
Rank18Aligned Residues424
% Identity13%Templatec2d5wA_
PDB info PDB header:peptide binding proteinChain: A: PDB Molecule:peptide abc transporter, peptide-binding protein; PDBTitle: the crystal structure of oligopeptide binding protein from thermus2 thermophilus hb8 complexed with pentapeptide
Resolution1.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   120.........130...... ...140.........150.........160.........170.. . ......180.
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Query Sequence  HILRVLYYRPLRNLLPG. . . . SALRRSETHIARQIFSSLTRINEENGELEADIAHHW. . . . . . . . . . . . . Q. QISPLHWR
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Template Sequence  NSLVIGASQEPRVLAGDFLRVISNQAIKSEIEQYLFAPFIGFNAD. SQNFPVLATEVPTLENGRLRVTDIGGGKKRLEMD
Template Known Secondary structure  TS


SS
SS
TT
SSB




S
TT.S
SSBSS


TTTT
TT
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   6...10.........20.........30.........40.........50 .........60.........70.........80....
 
   182.......190.........200.........210.. .......220.........230.........240.........250.....
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Query Sequence  FFLRPGVHFHHGRELEMDDVIASLKRINTLP. . . . . . LYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREW
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Template Sequence  ITIRPDAKWSDGRPITTEDVAFYFEVGKAKGMPVLNPDFWERVNVRIKDARNFTLIFEPAYYY. . . DTYGPINTYAPKHI
Template Known Secondary structure  B
TT
B
TTS
B

STT


S

SSSSS

TT...TT
S
B




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   85....90.........100.........110.........120.........130.........140....... ..150.........160.
 
   256...260.........270.........280 .........290 ...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ETLSNFASHPIGTGPYAVIRNSTNQ. LKIQAFDDFF. . . . . GYR
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Template Sequence  MGPEWERVKAAARGLDPDKDAEKLNELYRNFFLKFATPQALNRGAMVYSGPFKLKRWVPGNSIEMERNPNFPIKPEGGES
Template Known Secondary structure  TT

TTTTTTTSTT




SSTTT
TT




TT
GG
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   162.......170.........180.........190.........200.........210.........220.........230.........240.
 
   294.....300.........310.........320..... ....330.........340......
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Query Sequence  ALIDEVNVWVLPEIADEPAGGLMLKGPQGEEK. . . . . . . . . . . . . . . . . . . . EIESRLEEGCYYLLFDSRTHR. . . . . . .
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Template Sequence  KYVQKVVYRFIQNTNSLLVAVIGGSIDATSSVSLTFDQGRSPQLVRRAPGRFDIWFVPGAIWEHIDINKFENCQVVKDLG
Template Known Secondary structure  GS
S
SST

S
SSS

T
TT
TTT


TTST
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   242.......250.........260.........270.........280.........290.........300.........310.........320.
 
   347..350.........360.........370........ .380.........390.........400..
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Query Sequence  GANQQVRDWVSYVLSPTNLVYFAEEQYQQLWF. PAYGLLPRWHHARTIKSEKPAGLE. . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LNDKRTRQAILHALNREGLVKAFFDGLQPVAHTWIAPVNPLFNPNVKKYEFDLKKAEALLAEMGWRKGPDGILQRTVNGR
Template Known Secondary structure  TTSTS
TTSS
B
SSSS
TTSTT

TTS





TT

TTS
TT
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   322.......330.........340.........350.........360.........370.........380.........390.........400.
 
   403......410.........420.........430.........440....... ..450.........460.........470
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Query Sequence  . . . . SLTLTFYQDHSEHRVIAGIMQQILASHQVTLKIKEIDYDQWHTGE. . . . . . . . IESDIWLNSANFTLPLDFSVFAH
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Template Conservation     
 
              
  
   
   

 
                              

             
Template Sequence  TVRFEIEYVTTAGNVVRERTQQFFAEDLKKIGIAVKINNAPSAVVFADEFIQRASECKWTGMFEFAWVSNLQEDGSLFQY
Template Known Secondary structure 

BTT
TT


B
TBT
GGGTSS
S

S



GGG
S
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   402.......410.........420.........430.........440.........450.........460.........470.........480.
 
   471. .......480.........490.........500 .........510.........520.........
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Query Sequence  LC. . . . . . . . . . . . . . . . . . . . EVPLLQHCIPIDWQADAARWRNGEMNLA. NWCQQLVASKAMVPLLHHWLIIQGQRSMR
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Template Sequence  KNLNTGAIMVPTKENNYQGQNIGGWRNDEFDRLTSQAVLEFDPERRKQLFWRAQEIWAEELPALPLYFRANPYVVRKGLV
Template Known Secondary structure  B
TTT

B
S
SGGGTT
SS
TT



TT

S
STT
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   482.......490.........500.........510.........520.........530.........540.........550.........560.
 
   530....... ..540.......
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Query Sequence  GLRMNTLG. . . . . . . WFDFKSAWFA
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Template Sequence  NYVASAYSGGYGYPGWNAWEIGWES
Template Known Secondary structure  S



SSTTTTT
S
TTGGG
GG
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   562.......570.........580......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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