Job Description P0AEF4 Confidence 87.57% Date Thu Jan 5 11:23:11 GMT 2012 Rank 253 Aligned Residues 61 % Identity 11% Template c6paxA_ PDB info PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Resolution 2.50 Å

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		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	T	L	N	A	V	R	K	L	F	K	E	P	G	V	Q	H	T	A	E	T	V	A	Q	A	L	T	I	S	R	T	T	A	R	R	Y	L	E	Y	C	A	S	R	H	L	I	I	A	E	I	V	H	G	K	V	G	R	P	Q	R	I	Y
Query Conservation
Alig confidence																																																						.	.
Template Conservation																																																						.	.
Template Sequence		P	L	P	D	S	T	R	Q	R	I	V	E	L	A	H	S	G	A	R	P	C	D	I	S	R	I	L	Q	V	S	N	G	C	V	S	K	I	L	G	R	Y	Y	A	T	G	S	I	R	P	R	A	I	.	.	G	G	S	K	P	R	V	A	T
Template Known Secondary structure																	T	T											T																	S			S					.	.	S					S	S	S
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions