 |
Job Description | P0AEF4 | Confidence | 60.43% | Date | Thu Jan 5 11:23:11 GMT 2012 |
Rank | 474 | Aligned Residues | 80 |
% Identity | 11% | Template | c3sqnB_ |
PDB info |
PDB header:transcription regulator | Chain: B: PDB Molecule:conserved domain protein; |
PDBTitle: putative mga family transcriptional regulator from enterococcus2 faecalis
|
Resolution | 2.31 Å |
|
 |
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | |
. | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | A | P | L | T | L | L | I | V | E | D | . |
E | T | P | L | A | E | M | H | A | E | Y | I | R | H | I | P | G | F | S | Q | I | L | L | A | G | N | L | A | Q | A | R | M | M | I | E | R | F | K | P | G | L | I | L | L | D | N | Y | L | P | D | G | R | G | I | N | L | L | H | E | L | V | Q | A | H | Y | P | G | D |
Query Conservation |   |
  |   |   |
|
|
|
|
|
|
|
| . |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |
|
|   |   |
|   |   |   |   |
|
|
|
|
|
|
|   |   |
|
|   |   |   |
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |
|
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |
|
|
|
|
|
|   |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|
Template Sequence |   |
A | Q | T | X | T | A | Y | F | L | F | Q | G | E | P | A | W | K | A | F | L | Q | Q | E | L | A | A | Y | L | G | T | R | V | K | L | Q | A | I | E | Y | V | E | L | S | Q | . |
L | T | L | N | E | A | D | I | I | I | S | N | F | P | H | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | D | L | P |
Template Known Secondary structure |   |
|
| S |  |  |  |  |  |  |
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |  |  |  |  |  |
|
| G | G | G | G | T | T | . |
|
|
|
| T | T |
|  |  |  |  | S |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
| S | S |
|
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  | . |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
393 | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | |
. | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | V | F | T | T | A | A | S | D | M | E | T | V | S | E | A | V | R |
Query Conservation |   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|   |   |   |
|   |   |
|   |   |   |
|   |   |
Template Sequence |   |
V | F | Y | L | S | L | I | P | T | K | N | E | L | R | R | L | A | E |
Template Known Secondary structure |   |
 |  |  |
|
| S | S |
|
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
458 | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|