Job Description P0AEF4 Confidence 99.96% Date Thu Jan 5 11:23:11 GMT 2012 Rank 3 Aligned Residues 196 % Identity 20% Template c3r0jA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:possible two component system response transcriptional PDBTitle: structure of phop from mycobacterium tuberculosis Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	P	L	T	L	L	I	V	E	D	E	T	P	L	A	E	M	H	A	E	Y	I	R	H	I	P	G	F	S	Q	I	L	L	A	G	N	L	A	Q	A	R	M	M	I	E	R	F	K	P	G	L	I	L	L	D	N	Y	L	P	D	G	R	G	I	N	L	L	H	E	L	V	Q	A	H	Y	P	G	D	V
Query Conservation
Alig confidence																													.	.																													.
Template Conservation																													.	.																													.
Template Sequence		T	P	E	A	R	V	L	V	V	D	D	E	A	N	I	V	E	L	L	S	V	S	L	K	F	Q	G	.	.	F	E	V	Y	T	A	T	N	G	A	Q	A	L	D	R	A	R	E	T	R	P	D	A	V	I	L	D	V	.	X	P	G	X	D	G	F	G	V	L	R	R	L	R	A	D	G	I	D	A	P	A
Template Known Secondary structure			S	S								S															T	T	.	.							S	S														S							.			S	S												T	T
Template Predicted Secondary structure																													.	.																													.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	T	T	A	A	S	D	M	E	T	V	S	E	A	V	R	C	G	V	F	D	Y	L	I	K	P	I	A	Y	E	R	L	G	Q	T	L	T	R	F	R	Q	R	K	H	M	L	E	S	I	D	S	A	S	Q	K	Q	I	D	E	M	F	N	A	Y	A	R	G	E	P	K	D	E	L	P	T	G	I	D	P
Query Conservation
Alig confidence																																																								.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		L	F	L	T	A	R	D	S	L	Q	D	K	I	A	G	L	T	L	G	G	D	D	Y	V	T	K	P	F	S	L	E	E	V	V	A	R	L	R	V	I	L	R	R	A	G	K	N	V	R	L	T	F	A	D	.	.	.	.	.	I	E	L	D	E	E	T	H	E	V	W	K	A	G	Q	P	V	S	L	S	P
Template Known Secondary structure							S	T	T									T	S	T	T						S	S																										T	T	.	.	.	.	.					T	T	T						T	T
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.						150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.						.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.
Query SS confidence																												.	.	.	.	.
Query Sequence		L	T	L	N	A	V	R	K	L	F	K	E	P	G	V	Q	H	T	A	E	T	V	A	Q	A	L	.	.	.	.	.	T	I	S	R	T	T	A	R	R	Y	L	E	Y	C	A	S	R	H
Query Conservation																												.	.	.	.	.
Alig confidence																												.	.	.	.	.
Template Conservation
Template Sequence		T	E	F	T	L	L	R	Y	F	V	I	N	A	G	T	V	L	S	K	P	K	I	L	D	H	V	W	R	Y	D	F	G	G	D	V	N	V	V	E	S	Y	V	S	Y	L	R	R	K	I
Template Known Secondary structure													T	T	T			B										T	T	T	S			S		T
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions