Job Description P0AEF4 Confidence 99.95% Date Thu Jan 5 11:23:11 GMT 2012 Rank 9 Aligned Residues 199 % Identity 18% Template c3q9sA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding response regulator; PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans Resolution 2.40 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	L	I	V	E	D	E	T	P	L	A	E	M	H	A	E	Y	I	R	H	I	P	G	F	S	Q	I	L	L	A	G	N	L	A	Q	A	R	M	M	I	E	R	F	K	P	G	L	I	L	L	D	N	Y	L	P	D	G	R	G	I	N	L	L	H	E	L	V	Q	A	H	Y	P	G	D	V	V	F	T	T
Query Conservation
Alig confidence																									.	.																																													.
Template Conservation																									.	.																																													.
Template Sequence		R	I	L	V	I	E	D	D	H	D	I	A	N	V	L	R	X	D	L	T	D	A	G	.	.	Y	V	V	D	H	A	D	S	A	X	N	G	L	I	K	A	R	E	D	H	P	D	L	I	L	L	D	L	G	L	P	D	F	D	G	G	D	V	V	Q	R	L	R	K	.	N	S	A	L	P	I	I	V	L	T
Template Known Secondary structure								S														T	T	T	.	.							S	S											S			S								S														T	.	T
Template Predicted Secondary structure																									.	.																																													.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	S	D	M	E	T	V	S	E	A	V	R	C	G	V	F	D	Y	L	I	K	P	I	A	Y	E	R	L	G	Q	T	L	T	R	F	R	Q	R	K	H	M	L	E	S	I	D	S	A	S	Q	K	Q	I	D	E	M	F	N	A	Y	A	R	G	E	P	K	D	E	L	P	T	G	I	D	P	L	T	L	N
Query Conservation
Alig confidence																																																					.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence		A	R	D	T	V	E	E	K	V	R	L	L	G	L	G	A	D	D	Y	L	I	K	P	F	H	P	D	E	L	L	A	R	V	K	V	Q	L	R	Q	R	T	S	E	S	L	S	X	G	D	L	T	.	.	.	.	.	.	L	D	P	Q	K	R	L	V	T	Y	K	G	E	E	L	R	L	S	P	K	E	F	D
Template Known Secondary structure		S			S											T		S					S	S																			S						T	T			.	.	.	.	.	.			T	T	T	T					T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.							.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.						.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		A	V	R	K	L	F	K	E	P	G	V	Q	H	T	A	E	T	V	A	Q	A	L	.	.	.	.	.	T	I	S	R	T	T	A	R	R	Y	L	E	Y	C	A	S	R	H	L	I	I	A	E	I	V	H
Query Conservation																								.	.	.	.	.
Alig confidence																								.	.	.	.	.
Template Conservation
Template Sequence		I	L	A	L	L	I	R	Q	P	G	R	V	Y	S	R	Q	E	I	G	Q	E	I	W	Q	G	R	L	P	E	G	S	N	V	V	D	V	H	X	A	N	L	R	A	K	L	R	D	L	D	G	Y	G	L
Template Known Secondary structure									S	T	T														T	T		S		T	T		S																	S				S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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