Job Description P69681 Confidence 100.00% Date Thu Jan 5 12:11:47 GMT 2012 Rank 4 Aligned Residues 369 % Identity 21% Template c3hd6A_ PDB info PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.												.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	A	L	V	L	F	M	T	I	P	G	I	A	L	F	Y	G	G	L	I	R	G	K	N	V	L	S	M	L	T	Q	V	T	V	T	F	A	L	V	C	I	L	W	V	V	Y	G	Y	S	L	A	F	G	E	G	N	N	F	F	G	N	I	N	W	L	M	.	.	.	.	.	.	.	.	.	.	.	L	K	N
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																																																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.
Template Sequence		P	L	T	C	L	L	L	Q	.	V	I	M	V	I	L	F	G	V	F	V	R	Y	D	F	E	N	E	F	Y	Y	R	Y	P	S	F	Q	D	V	H	V	M	V	F	V	G	F	G	F	L	M	T	F	L	Q	R	Y	G	F	S	A	V	G	F	N	F	L	L	A	A	F	G	I	Q	W	A	L	L	M	Q	G
Template Known Secondary structure										.																																			T						G	G	G	S	T	T
Template Predicted Secondary structure										.
Template SS confidence
		12	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	L	T	A	V	M	G	S	I	Y	Q	Y	I	H	V	A	F	Q	G	S	F	A	C	I	T	V	G	L	I	V	G	A	L	A	E	R	I	R	F	S	A	V	L	I	F	V	V	V	W	L	T	L	S	Y	I	P	I	A	H	M	V	W	G	G	G	L	L	A	S	H	G	A	L	D	F	A	G	G	T
Query Conservation
Alig confidence																																																	.														.	.	.	.	.
Template Conservation																																																	.														.	.	.	.	.
Template Sequence		W	F	H	F	L	Q	D	R	Y	I	V	V	G	V	E	N	L	I	N	A	D	F	C	V	A	S	V	C	V	A	F	G	A	V	L	G	K	V	S	P	I	Q	L	L	I	M	T	.	F	F	Q	V	T	L	F	A	V	N	E	F	I	.	.	.	.	.	L	L	N	L	L	K	V	K	D	A	G	G	S	M
Template Known Secondary structure			T	T		B	T	T	T	B																										T	T	S	S										.														.	.	.	.	.			T	T	S					T	T		T	T
Template Predicted Secondary structure																																																	.														.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.						.	170	.	.	.	.	.	.	.	.	.	180	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.				.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		V	V	H	I	N	A	A	I	A	G	L	V	G	A	Y	L	I	G	K	R	V	G	F	G	.	.	.	K	E	A	F	K	P	H	N	L	P	M	V	F	T	G	T	A	I	L	Y	I	G	W	F	G	F	N	A	G	S	A	G	T	A	N	E	I	A	A	L	A	F	V	N	T	V	V	A	T	A	A	A	I
Query Conservation																										.	.	.
Alig confidence																										.	.	.																																						.
Template Conservation																																																																		.
Template Sequence		T	I	H	T	F	G	A	Y	F	G	L	T	V	T	R	I	L	Y	R	R	N	L	E	Q	S	K	E	R	Q	N	S	V	Y	Q	S	D	L	F	A	M	I	G	T	L	F	L	W	M	Y	W	P	S	F	N	S	A	I	S	Y	H	G	D	S	Q	.	H	R	A	A	I	N	T	Y	C	S	L	A	A	C	V
Template Known Secondary structure		T	T															T			T	T	G	G	G	G	T	T	T	S	S																								T	T	T	T		S	S					.
Template Predicted Secondary structure																																																																		.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		265	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.					.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure											.	.																						.																														.	.	.	.
Query SS confidence											.	.																						.																														.	.	.	.
Query Sequence		L	G	W	I	F	G	E	W	A	.	.	L	R	G	K	P	S	L	L	G	A	C	S	G	A	I	A	G	L	V	G	V	.	T	P	A	C	G	Y	I	G	V	G	G	A	L	I	I	G	V	V	A	G	L	A	G	L	W	G	V	T	M	.	.	.	.	L	K	R	L	L	R	V	D	D	P	C	D	V	F
Query Conservation											.	.																						.																														.	.	.	.
Alig confidence											.	.																						.																														.	.	.	.
Template Conservation
Template Sequence		L	T	S	V	A	I	S	S	A	L	H	K	K	G	K	L	D	M	V	H	I	Q	N	A	T	L	A	G	G	V	A	V	G	T	A	A	E	M	M	L	M	P	Y	G	A	L	I	I	G	F	V	C	G	I	I	S	T	L	G	F	V	Y	L	T	P	F	L	E	S	R	L	H	I	Q	D	T	C	G	I	N
Template Known Secondary structure											T	S	T	T											G	G	G						T	T	T	T	T	T	T		S																																				T	T
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	H	G	V	C	G	I	V	G	C	I	M	T	G	I	F	A	A	S	S	L	G	G	V	G	F	A	E	G	V	T	M	G	H	Q	L	L	V	Q	L	E	S	I	A	I	T	I	V	W	S	G	V	V	A	F	I	G	Y	K	L	A	D	L	T	V	G	L	R	V	P	E	E	Q	E	R	E	G	L	D
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.
Template Sequence		N	L	H	G	I	P	G	I	I	G	G	I	V	G	A	V	T	A	A	S	.	.	.	.	.	.	.	.	.	D	W	T	A	R	T	Q	G	K	F	Q	I	Y	G	L	L	V	T	L	A	M	A	L	M	G	G	I	I	V	G	L	I	L	R	L	P	F	W	G	Q	P	S	D	E	N	C	F	E	D	A	V
Template Known Secondary structure				T																		.	.	.	.	.	.	.	.	.																																		T	S	T	T	S					T	T	S	T	T		G	G	G
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.										.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		418	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	S	H	G	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	W	E	M	P	E	G
Template Known Secondary structure		T	S				T	T
Template Predicted Secondary structure
Template SS confidence
		435	.	.	.	.	440	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions