Job Description P69681 Confidence 100.00% Date Thu Jan 5 12:11:47 GMT 2012 Rank 1 Aligned Residues 389 % Identity 39% Template c2b2hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) Resolution 1.54 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		D	K	A	D	N	A	F	M	M	I	C	T	A	L	V	L	F	M	T	I	P	G	I	A	L	F	Y	G	G	L	I	R	G	K	N	V	L	S	M	L	T	Q	V	T	V	T	F	A	L	V	C	I	L	W	V	V	Y	G	Y	S	L	A	F	G	E	G	.	N	N	F	F	G	N	I	N	W	L	M	L	K
Query Conservation																																																																				.
Alig confidence																					.																																															.
Template Conservation																					.
Template Sequence		S	D	G	N	V	A	W	I	L	A	S	T	A	L	V	M	L	M	V	.	P	G	V	G	F	F	Y	A	G	M	V	R	R	K	N	A	V	N	M	I	A	L	S	F	I	S	L	I	I	T	V	L	L	W	I	F	Y	G	Y	S	V	S	F	G	N	D	I	S	G	I	I	G	G	L	N	Y	A	L	L	S
Template Known Secondary structure																					.									T	T	S		G	G	G																						T							S	S			T	T	T				S	T	T	G	G	G	T
Template Predicted Secondary structure																					.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	E	L	T	A	V	M	G	S	I	Y	Q	Y	I	H	V	A	F	Q	G	S	F	A	C	I	T	V	G	L	I	V	G	A	L	A	E	R	I	R	F	S	A	V	L	I	F	V	V	V	W	L	T	L	S	Y	I	P	I	A	H	M	V	W	G	G	G	L	L	A	S	H	G	A	L	D	F	A	G	G
Query Conservation
Alig confidence						.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.
Template Sequence		G	V	K	G	.	.	.	.	.	.	.	E	D	L	L	F	M	M	Y	Q	M	M	F	A	A	V	T	I	A	I	L	T	S	A	I	A	E	R	A	K	V	S	S	F	I	L	L	S	A	L	W	L	T	F	V	Y	A	P	F	A	H	W	L	W	G	G	G	W	L	A	K	L	G	A	L	D	F	A	G	G
Template Known Secondary structure		T			T	.	.	.	.	.	.	.																					G	G	G	G	T	T	T	B																T										S	S						T	T				S	S		T
Template Predicted Secondary structure						.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.								.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	V	H	I	N	A	A	I	A	G	L	V	G	A	Y	L	I	G	K	R	V	G	F	G	K	E	A	F	K	P	H	N	L	P	M	V	F	T	G	T	A	I	L	Y	I	G	W	F	G	F	N	A	G	S	A	G	T	A	N	E	I	A	A	L	A	F	V	N	T	V	V	A	T	A	A	A	I	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	V	V	H	I	S	S	G	F	A	A	L	A	V	A	M	T	I	G	K	R	A	G	F	E	E	Y	S	I	E	P	H	S	I	P	L	T	L	I	G	A	A	L	L	W	F	G	W	F	G	F	N	G	G	S	A	L	A	A	N	D	V	A	I	N	A	V	V	V	T	N	T	S	A	A	V	A	G	F	V
Template Known Secondary structure		T	T	T																			T	T	T	T	T	S					S																						G	G	G	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	F	G	E	W	A	L	R	G	K	P	S	L	L	G	A	C	S	G	A	I	A	G	L	V	G	V	T	P	A	C	G	Y	I	G	V	G	G	A	L	I	I	G	V	V	A	G	L	A	G	L	W	G	V	T	M	L	K	R	L	L	R	V	D	D	P	C	D	V	F	G	V	H	G	V	C	G	I	V
Query Conservation
Alig confidence										.																																																				.
Template Conservation										.																																																				.
Template Sequence		W	M	V	I	G	W	I	K	.	G	K	P	G	S	L	G	I	V	S	G	A	I	A	G	L	A	A	I	T	P	A	A	G	F	V	D	V	K	G	A	I	V	I	G	L	V	A	G	I	V	C	Y	L	A	M	D	F	R	I	K	.	K	K	I	D	E	S	L	D	A	W	A	I	H	G	I	G	G	L	W
Template Known Secondary structure										.	S																			T	T	T	T	T	T																											.	T	T				T	T
Template Predicted Secondary structure										.																																																				.
Template SS confidence
		234	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	C	I	M	T	G	I	F	A	A	S	S	L	G	G	V	G	F	A	E	G	V	T	M	G	H	Q	L	L	V	Q	L	E	S	I	A	I	T	I	V	W	S	G	V	V	A	F	I	G	Y	K	L	A	D	L	T	V	G	L	R	V	P	E	E	Q	E	R	E	G	L	D	V	N	S	H	G	E	N	A	Y
Query Conservation
Alig confidence																										.
Template Conservation																										.
Template Sequence		G	S	V	A	V	G	I	L	A	N	P	E	V	N	G	Y	A	G	L	L	F	G	N	P	.	Q	L	L	V	S	Q	L	I	A	V	A	S	T	T	A	Y	A	F	L	V	T	L	I	L	A	K	A	V	D	A	A	V	G	L	R	V	S	S	Q	E	E	Y	V	G	L	D	L	S	Q	H	E	E	V	A	Y
Template Known Secondary structure																S				G	G	G	T			.																																T		S	B																			S
Template Predicted Secondary structure																										.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		427
Predicted Secondary structure
Query SS confidence
Query Sequence		N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		391

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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