 |
Job Description | P69681 | Confidence | 3.03% | Date | Thu Jan 5 12:11:47 GMT 2012 |
Rank | 77 | Aligned Residues | 46 |
% Identity | 24% | Template | c1vryA_ |
PDB info |
PDB header:membrane protein | Chain: A: PDB Molecule:glycine receptor alpha-1 chain; |
PDBTitle: second and third transmembrane domains of the alpha-12 subunit of human glycine receptor
|
Resolution | UNK |
|
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | |
. | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
| . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | K | T | G | L | A | S | L | A | M | L | P | G | L | V | M | A | A | P | A | V | A | D | . |
K | A | D | N | A | F | M | M | I | C | T | A | L | V | L | F | M | T | I | P | G | I | A | L |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   | . |   |   |
|   |   |
|   |
|   |   |   |   |
|
|   |   |
|   |   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |
|
|   |
|
|
|   |
|
|
|
|
|
|   |   |   |
|   |   |
|
|
|   |   |
|
| . |
|   |
|   |
Template Sequence |   |
I | T | T | V | L | T | L | T | T | Q | S | S | G | S | R | A | S | L | P | K | V | S | Y | V | K | A | I | D | I | W | L | A | V | C | L | L | F | V | F | S | A | L | L | . |
E | Y | A | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
| T | T | T |
|
|
| S |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | |
. | . | 50 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|