Job Description Q46892 Confidence 8.09% Date Thu Jan 5 12:35:34 GMT 2012 Rank 5 Aligned Residues 179 % Identity 8% Template c2xutC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. Resolution 3.62 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.																	.	.
Predicted Secondary structure																											.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	M	L	G	R	M	I	E	H	S	G	G	A	E	S	L	A	N	Y	F	S	R	K	L	.	G	D	K	R	T	I	A	A	L	T	L	A	A	F	F	L	G	I	P	V	F	F	D	V	G	F	I	I	L	A	P	I	I	Y	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K
Query Conservation																											.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	D	V	F	H	S	F	V	I	G	V	Y	F	F	P	L	L	G	G	W	I	A	D	R	F	F	G	K	Y	N	T	I	L	W	L	S	L	I	Y	C	V	G	H	A	F	L	A	I	F	E	H	S	V	Q	G	F	Y	T	G	L	F	L	I	A	L	G	S	G	G	I	K	P	L	V	S	S	F	M	G	D
Template Known Secondary structure															T									T	T	S	S		S																					T	S	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	K	I	S	P	L	K	F	G	L	P	V	A	G	I	M	L	T	V	H	V	A	V	P	P	H	P	G	P	V	A	A	A	G	L	L	H	A	D	I	G	W	L	T	I	I	G	I	A	I	S	I	P	V	G	V	V	G	Y	F	A	A	K	I	I	N	K	R	Q	Y	A	M	S	V	E	V	L	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	F	D	Q	S	N	K	S	L	A	Q	K	A	F	D	M	F	Y	F	T	I	N	F	G	S	F	F	A	S	L	S	M	P	L	L	L	K	N	F	G	A	A	V	A	F	G	I	P	G	V	L	M	F	V	A	T	V	F	F	W	L	G	R	K	R	Y	I	H	M	P	V	E	G	K	G	N	I	G	L	V
Template Known Secondary structure		T		S	T	T	T	T	T																							T	S	T					T	S																						S	S	S	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	L	A	P	A	S	E	E	G	A	T	K	L	S	D	K	I	N	P	P	G	V	A	L	V	T	S	L	I	V	I	P	I	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	L	I	G	G	V	S	A	A	Y	A	L	V	N	I	P	T	L	G	I	V	A	G	L	C	C	A	M	V	L	V	M	G	F	V
Template Known Secondary structure													T	G	G	G	T	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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