Job Description P0ACI0 Confidence 99.41% Date Thu Jan 5 11:18:14 GMT 2012 Rank 18 Aligned Residues 261 % Identity 12% Template c3d6zA_ PDB info PDB header:transcription regulator/dna Chain: A: PDB Molecule:multidrug-efflux transporter 1 regulator; PDBTitle: crystal structure of r275e mutant of bmrr bound to dna and rhodamine Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.											40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.
Query Sequence		D	Q	P	L	S	L	D	N	V	A	A	K	A	G	Y	S	K	W	H	L	Q	.	.	.	.	.	.	.	.	.	.	R	M	F	K	D	V	T	G	H	A	I	G	A	Y	I	R	A	R	R	L	S	K	S	A	V	A	L	R	L	T	A	R	P	I	L	D	I	A	L	Q	Y	R	F	D	S	Q	Q	T	F
Query Conservation																							.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.																							.																							.
Template Conservation																																																							.																							.
Template Sequence		E	S	Y	Y	S	I	G	E	V	S	K	L	A	N	V	S	I	K	A	L	R	Y	Y	D	K	I	D	L	F	K	P	A	Y	V	D	P	D	T	S	Y	R	Y	Y	T	D	S	Q	L	I	H	L	D	L	.	I	K	S	L	K	Y	I	G	T	P	L	E	E	M	K	K	A	Q	D	L	E	M	.	E	E	L
Template Known Secondary structure			S												T												T	T	S	S			S				T	T	T							T	G	G	G	G					.							T	T												S		S	.	S
Template Predicted Secondary structure																																																							.																							.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																			.	.	.	.
Query SS confidence																			.	.	.	.
Query Sequence		T	R	A	F	K	K	Q	F	A	Q	T	P	A	L	Y	R	R	.	.	.	.	S	P	E	W	S	A	F	G	I	R	P	P	L	R	L	G	E	F	T	M	P	E	H	K	F	V	T	L	E	D	T	P	L	I	G	V	T	Q	S	Y	S	C	S	L	E	Q	I	S	D	F	R	H	E	M	R	Y	Q	F	W
Query Conservation																			.	.	.	.
Alig confidence																			.	.	.	.																																																											.
Template Conservation																																																																																	.
Template Sequence		F	A	F	Y	T	E	Q	E	R	Q	I	R	E	K	L	D	F	L	S	A	L	E	Q	T	I	S	L	V	K	K	R	M	K	R	Q	M	E	Y	P	A	L	G	E	V	F	V	L	D	E	E	E	I	R	I	I	Q	T	E	A	E	G	I	G	P	E	N	V	L	N	A	S	Y	S	K	L	K	K	F	I	.
Template Known Secondary structure																																								S		S	S																		T	T			T	T	T			G	G	G	G								.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	F	L	G	N	A	P	T	I	P	P	V	L	Y	G	L	N	E	T	R	P	S	Q	D	K	D	D	E	Q	E	V	F	Y	T	T	A	L	A	Q	D	Q	A	D	G	Y	V	L	T	G	H	P	V	M	L	Q	G	G	E	Y	V	M	F	T	Y	E	G	L	G	T	G	V	Q	E	F	I	L	T	V	Y
Query Conservation
Alig confidence		.	.																																																																														.
Template Conservation		.	.																																																																														.
Template Sequence		.	.	E	S	A	D	G	F	T	N	N	S	Y	G	A	T	F	S	F	Q	P	Y	T	S	I	D	E	M	T	Y	R	H	I	F	T	P	V	L	T	N	K	Q	I	S	S	I	T	P	D	M	E	I	T	T	I	P	K	G	R	Y	A	C	I	A	Y	N	F	S	P	E	H	Y	F	L	N	L	Q	K	L	.
Template Known Secondary structure		.	.					S	S			S												S		G	G	G				S										S			S	S			T	T	S							S																							.
Template Predicted Secondary structure		.	.																																																																														.
Template SS confidence
				160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	C	M	P	M	L	N	L	T	R	R	K	G	Q	D	I	E	R	Y	Y	P	A	E	D	A	K	A	G	D	R	P	I	N	L	R	C	E	L	L	I	P	I	R
Query Conservation
Alig confidence															.									.	.
Template Conservation															.									.	.
Template Sequence		I	K	Y	I	A	D	R	Q	L	T	V	V	S	.	D	V	Y	E	L	I	I	P	.	.	I	H	Y	S	P	K	K	Q	E	E	Y	R	V	E	M	K	I	E	I	L
Template Known Secondary structure								T	T			B		S	.									.	.	S				S	S	S
Template Predicted Secondary structure															.									.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions