Job Description P0ACI0 Confidence 100.00% Date Thu Jan 5 11:18:14 GMT 2012 Rank 1 Aligned Residues 283 % Identity 100% Template c1d5yD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:rob transcription factor; PDBTitle: crystal structure of the e. coli rob transcription factor2 in complex with dna Resolution 2.70 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	G	I	I	R	D	L	L	I	W	L	E	G	H	L	D	Q	P	L	S	L	D	N	V	A	A	K	A	G	Y	S	K	W	H	L	Q	R	M	F	K	D	V	T	G	H	A	I	G	A	Y	I	R	A	R	R	L	S	K	S	A	V	A	L	R	L	T	A	R	P	I	L	D	I	A	L	Q	Y	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	A	G	I	I	R	D	L	L	I	W	L	E	G	H	L	D	Q	P	L	S	L	D	N	V	A	A	K	A	G	Y	S	K	W	H	L	Q	R	M	F	K	D	V	T	G	H	A	I	G	A	Y	I	R	A	R	R	L	S	K	S	A	V	A	L	R	L	T	A	R	P	I	L	D	I	A	L	Q	Y	R	F
Template Known Secondary structure														T	T	T	S	S	S	S				T	T	T	T	T	T	T	S	S														S	S																																T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	Q	Q	T	F	T	R	A	F	K	K	Q	F	A	Q	T	P	A	L	Y	R	R	S	P	E	W	S	A	F	G	I	R	P	P	L	R	L	G	E	F	T	M	P	E	H	K	F	V	T	L	E	D	T	P	L	I	G	V	T	Q	S	Y	S	C	S	L	E	Q	I	S	D	F	R	H	E	M	R	Y	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	S	Q	Q	T	F	T	R	A	F	K	K	Q	F	A	Q	T	P	A	L	Y	R	R	S	P	E	W	S	A	F	G	I	R	P	P	L	R	L	G	E	F	T	M	P	E	H	K	F	V	T	L	E	D	T	P	L	I	G	V	T	Q	S	Y	S	C	S	L	E	Q	I	S	D	F	R	H	E	M	R	Y	Q
Template Known Secondary structure		S	S													S	S									S	S	B			T	T							S	S																												G	G	G
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	W	H	D	F	L	G	N	A	P	T	I	P	P	V	L	Y	G	L	N	E	T	R	P	S	Q	D	K	D	D	E	Q	E	V	F	Y	T	T	A	L	A	Q	D	Q	A	D	G	Y	V	L	T	G	H	P	V	M	L	Q	G	G	E	Y	V	M	F	T	Y	E	G	L	G	T	G	V	Q	E	F	I	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	W	H	D	F	L	G	N	A	P	T	I	P	P	V	L	Y	G	L	N	E	T	R	P	S	Q	D	K	D	D	E	Q	E	V	F	Y	T	T	A	L	A	Q	D	Q	A	D	G	Y	V	L	T	G	H	P	V	M	L	Q	G	G	E	Y	V	M	F	T	Y	E	G	L	G	T	G	V	Q	E	F	I	L	T
Template Known Secondary structure								T	T		S	S			S												S	S	S	T	T																G	G	G		T	T																				G	G	G
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	G	T	C	M	P	M	L	N	L	T	R	R	K	G	Q	D	I	E	R	Y	Y	P	A	E	D	A	K	A	G	D	R	P	I	N	L	R	C	E	L	L	I	P	I	R	R
Query Conservation
Alig confidence																														.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		V	Y	G	T	C	M	P	M	L	N	L	T	R	R	K	G	Q	D	I	E	R	Y	Y	P	A	E	D	D	.	.	.	.	R	P	I	N	L	R	C	E	L	L	I	P	I	R	R
Template Known Secondary structure					T					T	T			B		S	S								G	G	G			.	.	.	.		S											B
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270					.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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