Job Description P0A7X6 Confidence 100.00% Date Thu Jan 5 11:06:25 GMT 2012 Rank 3 Aligned Residues 172 % Identity 38% Template c2qggA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:16s rrna-processing protein rimm; PDBTitle: x-ray structure of the protein q6f7i0 from acinetobacter2 calcoaceticus amms 248. northeast structural genomics3 consortium target asr73. Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	P	V	D	P	I	V	L	G	K	M	G	S	S	Y	G	I	R	G	W	L	R	V	F	S	S	T	E	D	A	E	S	I	F	D	Y	Q	P	W	F	I	Q	K	A	G	Q	W	Q	Q	V	Q	L	E	S	W	K	H	H	N	Q	D	M	I	I	K	L	K	G	V	D	D	R	D	A	A	N	L	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	P	E	D	R	I	Q	I	G	Q	L	R	S	A	Y	G	L	N	G	W	L	W	V	Y	S	N	T	E	P	X	S	N	X	F	D	Y	L	P	W	Y	I	E	T	K	A	G	W	Q	T	V	D	V	K	R	W	K	P	H	G	K	G	L	V	V	S	L	K	G	V	S	D	R	T	G	A	E	S	L	V
Template Known Secondary structure					S	S												T	T	T	T								S	S	S	G	G	G	G	G	G	S	S	S						T	T														T	T							T	T			S						T	T	T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence		N	C	E	I	V	V	D	S	S	Q	L	P	Q	L	E	E	G	D	Y	Y	W	K	D	L	M	G	C	Q	V	V	.	.	.	.	T	T	E	G	Y	D	L	G	K	V	V	D	M	M	E	T	G	S	N	D	V	L	V	I	K	A	N	L	K	D	A	F	G	I	K	E	R	L	V	P	F	L	D	G	Q	V
Query Conservation																																.	.	.	.
Alig confidence																																.	.	.	.																															.													.
Template Conservation																																																																		.													.
Template Sequence		A	S	N	I	W	I	A	K	S	Q	L	P	K	A	D	V	D	E	Y	Y	W	S	D	L	K	G	L	T	V	L	G	L	D	D	E	E	Q	E	V	N	L	G	Q	I	H	E	L	F	E	T	G	A	N	D	V	X	V	V	R	A	T	P	D	S	.	I	D	S	E	E	R	X	I	P	W	H	K	.	D	V
Template Known Secondary structure		T							T	T																T	T								T	T	S															S	S										S	S	S	.	S	S	S									T	.	T	T
Template Predicted Secondary structure																																																																		.													.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.		.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	K	V	D	L	T	T	R	S	I	E	V	D	W	D	P	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	R	V	D	L	E	A	G	R	I	Y	V	N	W	G	V	D
Template Known Secondary structure							T	T	T	T					S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions