Job Description P0A7X6 Confidence 100.00% Date Thu Jan 5 11:06:25 GMT 2012 Rank 2 Aligned Residues 164 % Identity 38% Template c2f1lA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:16s rrna processing protein; PDBTitle: crystal structure of a putative 16s ribosomal rna processing protein2 rimm (pa3744) from pseudomonas aeruginosa at 2.46 a resolution Resolution 2.46 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	I	V	L	G	K	M	G	S	S	Y	G	I	R	G	W	L	R	V	F	S	S	T	E	D	A	E	S	I	F	D	Y	Q	P	W	F	I	Q	K	A	G	Q	W	Q	Q	V	Q	L	E	S	W	K	H	H	N	Q	D	M	I	I	K	L	K	G	V	D	D	R	D	A	A	N	L	L	T	N	C	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	V	V	I	G	K	I	V	S	V	Y	G	I	R	G	E	V	K	V	Y	S	F	T	D	P	L	D	N	L	L	D	Y	R	R	W	T	L	R	R	D	G	E	I	R	Q	A	E	L	V	R	G	R	L	H	G	K	V	L	A	A	K	L	K	G	L	D	D	R	E	E	A	R	T	F	T	G	Y	E	I
Template Known Secondary structure														T	T	T	T								S	S	S	G	G	G	G	G	G									T	T														T	T							T	T			S						T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	D	S	S	Q	L	P	Q	L	E	E	G	D	Y	Y	W	K	D	L	M	G	C	Q	V	V	T	T	E	G	Y	D	L	G	K	V	V	D	M	M	E	T	G	S	N	D	V	L	V	I	K	A	N	L	K	D	A	F	G	I	K	E	R	L	V	P	F	L	D	G	Q	V	I	K	K	V	D	L	T	T
Query Conservation
Alig confidence										.	.	.	.	.																																											.														.
Template Conservation										.	.	.	.	.																																											.														.
Template Sequence		C	I	P	R	S	E	L	P	.	.	.	.	.	S	Y	Y	W	H	Q	L	E	G	L	K	V	I	D	Q	G	R	Q	L	L	G	V	I	D	H	L	L	E	T	G	A	N	D	V	X	V	V	K	P	C	A	G	.	S	L	D	D	R	E	R	L	L	P	Y	T	G	.	Q	C	V	L	S	I	D	L	A	A
Template Known Secondary structure					G	G	G	S		.	.	.	.	.								T	T						T	T	S													S	S	S									T	T	.	S	S	S	S								S	T	.	T	T						T	T	T
Template Predicted Secondary structure										.	.	.	.	.																																											.														.
Template SS confidence
		87	.	.	90	.	.	.	.						.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	I	E	V	D	W	D	P	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	X	R	V	D	W	D	A	D	F
Template Known Secondary structure		T								T	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions