Job Description P25397 Confidence 95.63% Date Thu Jan 5 11:41:47 GMT 2012 Rank 313 Aligned Residues 128 % Identity 21% Template c3ps9A_ PDB info PDB header:transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of mnmc from e. coli Resolution 2.54 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.							.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.															.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.														.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Query SS confidence																	.	.	.	.	.	.														.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Query Sequence		R	D	E	N	Y	F	T	D	K	Y	E	L	T	R	T	.	.	.	.	.	.	H	S	E	V	L	E	A	V	K	V	V	K	P	.	.	G	K	T	L	D	L	G	C	G	N	G	R	N	S	L	Y	L	A	A	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	D	V	D	A	W	D	.	.
Query Conservation																	.	.	.	.	.	.														.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Alig confidence																	.	.	.	.	.	.														.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Conservation
Template Sequence		F	D	D	V	Y	F	S	N	D	N	G	L	E	E	T	R	Y	V	F	L	G	G	N	Q	L	E	V	R	F	P	E	H	P	H	P	L	F	V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L	H	F	I	S	F	E	K	F
Template Known Secondary structure		T	T			S	S		T	T	T									T	T	G	G	G	T					G	G	G		S	S	S										T	T	S																		T	T	S	S											S	S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
			60	.	.	.	.	.	.	.	.	.	70	.	.	.																										.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.							.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure		.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Query SS confidence		.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Query Sequence		.	K	N	A	M	S	I	A	N	V	E	R	I	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	N	L	D	N	L	H	T	R	V	V	D	L	N	N	L	T	F	D	.	.	.	.	.	.	R	Q	Y	D	F	I	L	S	T	V	V	L	M	F
Query Conservation		.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Alig confidence		.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P	L	P	G	C	H	R	L	L	L	D	A	G	R	V	T	L	D	L	W	F	G	D	I	N	E	L	T	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W	F	L	D	G	F	A	P	A
Template Known Secondary structure													T	T		G	G	G																S								G	G	G	T								S						G	G	G	B		G	G	G	T	T										S		G	G
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		108	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		L	E	A	K	T	I	.	P	G	L	I	A	N	M	Q	R	C	T	K	P	G	G	Y	N	L
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		K	N	P	D	M	W	T	Q	N	L	F	N	A	M	A	R	L	A	R	P	G	G	T	L	A
Template Known Secondary structure		G		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions