Return to main results Retrieve Phyre Job Id

Job DescriptionP25397
Confidence98.77%DateThu Jan 5 11:41:47 GMT 2012
Rank262Aligned Residues99
% Identity16%Templatec3axtA_
PDB info PDB header:transferaseChain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine
Resolution2.49 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50... ......60.........70.........80.........90.. .......100.
Predicted Secondary structure 









...





























.....




Query SS confidence 























. . .






































. . . . .








Query Sequence  KPGKTLDLGCGNGRNSLYLAANGY. . . DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF. . . . . DRQYDFILS
Query Conservation      






 
     

  
 ... 
   
 
   
                           .....    
 
  
Alig confidence 























...






































.....








Template Conservation      


  



 



 
 
      
 
 


  

  
  
   


    
 
   

   
       





Template Sequence  RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL
Template Known Secondary structure  S
SS
TTT
S

S
TT

GGG
S
TS

SS
Template Predicted Secondary structure 






























Template SS confidence 















































































   52.......60.........70.........80.........90.........100.........110.........120.........130.
 
   102.......110.........120.........130....
Predicted Secondary structure 










Query SS confidence 
































Query Sequence  TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA
Query Conservation     
           
    
 




 
 
  
Alig confidence 

...




...



















Template Conservation 

...


  ... 




   

 



 


Template Sequence  DP. . . FGTPV. . . PFIESVALSMKRGGILSLTA
Template Known Secondary structure 

...SS

...
Template Predicted Secondary structure 

...


...



Template SS confidence 
































   132. ..... .140.........150........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions