Job Description P25397 Confidence 96.48% Date Thu Jan 5 11:41:47 GMT 2012 Rank 308 Aligned Residues 128 % Identity 20% Template c2qy6A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0209 protein yfck; PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7 Resolution 2.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.							20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.															.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.													.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query SS confidence																		.	.	.	.	.	.													.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query Sequence		R	D	E	N	Y	F	T	D	K	Y	E	L	T	R	T	H	.	.	.	.	.	.	S	E	V	L	E	A	V	K	V	V	K	P	.	.	G	K	T	L	D	L	G	C	G	N	G	R	N	S	L	Y	L	A	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	D	V	D	A	W	D	.	.
Query Conservation																		.	.	.	.	.	.													.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Alig confidence																		.	.	.	.	.	.													.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation
Template Sequence		F	D	D	V	Y	F	S	N	D	N	G	L	E	E	T	R	Y	V	F	L	G	G	N	Q	L	E	A	R	F	P	E	H	P	H	P	L	F	V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L	H	F	I	S	F	E	K	F
Template Known Secondary structure		T	T			S	S		T	T	T													T	T					G	G	G		S	S	S							S			T	T	S																		T	T	S	S											S	S
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.																								.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.							.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query SS confidence		.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query Sequence		.	K	N	A	M	S	I	A	N	V	E	R	I	K	S	I	E	N	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	H	T	R	V	V	D	L	N	N	L	T	F	D	R	Q	.	.	.	.	.	.	Y	D	F	I	L	S	T	V	V	L	M	F	L	E
Query Conservation		.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Alig confidence		.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P	L	P	G	C	H	R	L	L	L	D	R	V	T	L	D	L	W	F	G	D	I	N	E	L	I	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W	F	L	D	G	F	A	P	A	K	N
Template Known Secondary structure													T	T		G	G	G										T				S		S																	S						G	G	G	S		G	G	G	T	T									S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		A	K	T	I	.	P	G	L	I	A	N	M	Q	R	C	T	K	P	G	G	Y	N	L
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		P	D	M	W	T	Q	N	L	F	N	A	M	A	R	L	A	R	P	G	G	T	L	A
Template Known Secondary structure		G	G	G
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions