Job Description P25397 Confidence 99.07% Date Thu Jan 5 11:41:47 GMT 2012 Rank 241 Aligned Residues 132 % Identity 16% Template c2q41D_ PDB info PDB header:transferase Chain: D: PDB Molecule:spermidine synthase 1; PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820 Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.												.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.							.	.																																.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.							.	.																																.	.
Query Sequence		M	I	I	R	D	E	N	Y	F	T	D	K	Y	E	L	T	.	.	.	.	.	.	.	.	.	.	.	R	T	H	S	E	V	.	.	L	E	A	V	K	V	V	K	P	G	K	T	L	D	L	G	C	G	N	G	R	N	S	L	Y	L	A	A	N	G	Y	.	.	D	V	D	A	W	D	K	N	A	M	S	I
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.							.	.																																.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.							.	.																																.	.
Template Conservation
Template Sequence		V	I	V	F	Q	S	A	T	Y	G	K	V	L	V	L	D	G	V	I	Q	L	T	E	R	D	E	C	A	Y	Q	E	X	I	T	H	L	P	L	C	S	I	P	N	P	K	K	V	L	V	I	G	G	G	D	G	G	V	L	R	E	V	A	R	H	A	S	I	E	Q	I	D	X	C	E	I	D	K	X	V	V
Template Known Secondary structure								S	S	S		B					T	T						S	T	T									T					T	T	S	S	S								S		S	S	S							T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.					.	.	80	.	.	.	.	.	.	.	.	.	90	.				.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure														.	.	.	.															.	.	.																							.	.
Query SS confidence														.	.	.	.															.	.	.																							.	.
Query Sequence		A	N	V	E	R	I	K	S	I	E	N	L	.	.	.	.	D	N	L	H	T	R	V	V	D	L	N	N	L	T	.	.	.	F	D	R	Q	Y	D	F	I	L	S	T	V	V	L	M	F	L	E	A	K	T	I	.	.	P	G	L	I	A	N	M	Q	R	C	T	K	P	G	G	Y	N	L	I
Query Conservation														.	.	.	.															.	.	.																							.	.
Alig confidence														.	.	.	.															.	.	.																							.	.
Template Conservation
Template Sequence		D	V	S	K	Q	F	F	P	D	V	A	I	G	Y	E	D	P	R	V	N	L	V	I	G	D	G	V	A	F	L	K	N	A	A	E	G	S	Y	D	A	V	I	V	D	S	S	D	P	I	G	P	A	K	E	L	F	E	K	P	F	F	Q	S	V	A	R	A	L	R	P	G	G	V	V	C	T
Template Known Secondary structure									T	T	T	G	G	G	T	T		T	T						S								S	S		S	S												S	S	S	G	G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions